Re: [Jmol-users] Mac 10.3.9 with new FireFox (1.5.0.4)

2006-06-13 Thread rgb
On Tue, June 13, 2006 10:58 am, Bob Hanson wrote: >> > Rich, you sure you are looking at the Java console log? (In one of your > Mac directories? "logs" or "log" or something like that?) I checked both the javascript log and the java log. The interesting thing in the java log is what is not there.

Re: [Jmol-users] overflow control?

2006-06-13 Thread Bob Hanson
impossible. The JavaScript can't continue past your second statement until the script is completed. That said, realize that certain script commands may take a "life of their own" and not wait -- animation commands start their own threads, for example -- so they don't wait for anything. If you w

[Jmol-users] overflow control?

2006-06-13 Thread eric capps
i'm passing some commands to jmol using setTimeout() in _javascript_, and i'm trying to insure that the current job is done before moving on to the next one, to prevent the stack from piling up. the following bit of code SEEMS to have improved things somewhat:                 var done = null;      

Re: [Jmol-users] Hydrogens in pentose: sidechain or backbone?

2006-06-13 Thread Angel Herraez
Thanks to Tim Driscoll's clues, I have compiled some documentation on how Jmol interprets the "backbone" reserved keyword and other atom sets. I've put it on the wiki, Documentation section, http://wiki.jmol.org/index.php/AtomSets ___ Jmol-users mail

Re: [Jmol-users] Mac 10.3.9 with new FireFox (1.5.0.4)

2006-06-13 Thread Bob Hanson
[EMAIL PROTECTED] wrote: >On Tue, June 13, 2006 8:43 am, Bob Hanson wrote: > > >>rich, do you know how to get a Java console output? We need to see that >>to see what error is occurring. >> >> > >No errors reported Bob. It just sits there with an unfilled space for the >applet. > Rich, you

Re: [Jmol-users] Mac 10.3.9 with new FireFox (1.5.0.4)

2006-06-13 Thread rgb
On Tue, June 13, 2006 9:04 am, [EMAIL PROTECTED] wrote: > On Tue, June 13, 2006 8:43 am, Bob Hanson wrote: >> rich, do you know how to get a Java console output? We need to see that >> to see what error is occurring. > > No errors reported Bob. It just sits there with an unfilled space for the > ap

Re: [Jmol-users] Mac 10.3.9 with new FireFox (1.5.0.4)

2006-06-13 Thread rgb
On Tue, June 13, 2006 8:43 am, Bob Hanson wrote: > rich, do you know how to get a Java console output? We need to see that > to see what error is occurring. No errors reported Bob. It just sits there with an unfilled space for the applet. In the bottom FF window info bar it says: Applet jmolAppl

Re: [Jmol-users] Mac 10.3.9 with new FireFox (1.5.0.4)

2006-06-13 Thread Bob Hanson
rich, do you know how to get a Java console output? We need to see that to see what error is occurring. [EMAIL PROTECTED] wrote: >This new version of FF doesn't seem to want to display the Jmol applet >(v10.00) as reliably as the previous versions did (FF 1.5.0.3 and >earlier). Quite often the s

[Jmol-users] Mac 10.3.9 with new FireFox (1.5.0.4)

2006-06-13 Thread rgb
This new version of FF doesn't seem to want to display the Jmol applet (v10.00) as reliably as the previous versions did (FF 1.5.0.3 and earlier). Quite often the spot for the applet just stays as an empty block. Multiple reloads will sometimes get it to display. Safari works just fine under the sa