[Jmol-users] Jmol 10.9.94

2006-11-05 Thread Nicolas Vervelle
Jmol 10.9.94 is available at http://www.jmol.org/files/ --- 10.9.94 -full mesh/hermiteLevel implementation for secondary structure -Gaussian 03 read fix for not reading certain MOs. - Using Tomcat but need to do m

Re: [Jmol-users] Quantum chemistry/G03 and effective core potentials

2006-11-05 Thread Bob Hanson
that was a bug; it's fixed. Check for next prerelease (10.9.94) Romuald POTEAU wrote: >Dear JMOL developpers, > >I have checked the ability of JMOL to read Gaussian03 calculations using >effective core potentials (see attached file). It seems that molecular >orbitals (MO) are not read. Calculatio

[Jmol-users] 10.9.93

2006-11-05 Thread Bob Hanson
Just a note -- 10.9.93 is an experimental prerelease. It isn't complete, because variable width cartoons and ribbons are not implemented, and there are some other issues with changing the sizes of specific residues in cartoons and such. But feel free to experiment with it -- you can load any mo

Re: [Jmol-users] higher resolution cartoons

2006-11-05 Thread Frieda Reichsman
On Nov 4, 2006, at 7:01 PM, Bob Hanson wrote:http://www.stolaf.edu/academics/chemapps/jmol/examples-11/new.htmThis link should be:http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/new.htmFriedaset hermiteLevel and smoother cartoonsJmol 10.9.93 introduces a more sophisticated look for c

Re: [Jmol-users] Question and Suggestion

2006-11-05 Thread Frieda Reichsman
On Nov 5, 2006, at 3:24 AM, Romuald POTEAU wrote:I have a suggestion. I would like to rotate X degrees around an axis. I am aware that the /rotation/ command can do the job, but I would like to see a spin rotation. As far as I understand, it is not possible to specify to the /spin/ command any angl

Re: [Jmol-users] Question and Suggestion

2006-11-05 Thread Bob Hanson
Remove the $ from the "draw $lineN off" command. You want: jmolCheckbox('draw line1 {0. 0. 3.0} {0. 0. -3.0};color $line1 red;', 'draw line1 off;', "S4"); I know this is confusing, because I do the same thing. but "draw $line1" means "create a point at the center of line1". Similarly, draw

[Jmol-users] Question and Suggestion

2006-11-05 Thread Romuald POTEAU
Dear users, I would like to draw AND DELETE several lines or planes one by one, with the jmolCheckbox command. I have tried that : jmolCheckbox('draw line1 {0. 0. 3.0} {0. 0. -3.0};color $line1 red;', 'draw $line1 off;', "S4"); jmolBr(); jmolCheckbox('draw line2 {0. 0. 2.7} {0. 0. -2.7} ;color $l