Re: [Jmol-users] problem with old tutorial

OK, I have repaired the tutorial but am not understanding why it was not working the way it was. I moved the applets up a directory so they are "above" the page that calls them, and changed the directory in jmolInitialize accordingly. Now it works. I thought this structure of the applets be

Re: [Jmol-users] problem with old tutorial

no, I cleared cache, quit and restarted browser, same thing. http://moleculesinmotion.com/patterson_hb/myo/ On May 16, 2007, at May 16, 11:05 PM, Bob Hanson wrote: I think it's just a caching problem. Frieda Reichsman wrote: Hi, I have a tutorial that worked about 1 year ago with no proble

Re: [Jmol-users] problem with old tutorial

I think it's just a caching problem. Frieda Reichsman wrote: > Hi, I have a tutorial that worked about 1 year ago with no problems. I > just re-uploaded it and get this error: > > load: class JmolApplet not found. > java.lang.ClassNotFoundException: JmolApplet > at sun.applet.AppletClassLoader.f

Re: [Jmol-users] how to get frames from the movie

Balram Suman wrote: >Hi all, > >I have few movies prepared on jmol and playing in the web browser using java >applet. Now, I want to have few particular frames of the movies. Could >someone help me with that? > > > you mean movies that are animations? I would do this from the application, not

[Jmol-users] Get NullPointerException with new Jmol version 11.0.3

Hello Jmol Developers, I embedded Jmol version 10.2.0 in my application, and it run beautifully. When version 11.0.3 came out, I was eager to try out the new features. But I could not get started, I got following exception: Exception in thread "Thread-21" java.lang.NullPointerException

[Jmol-users] load append

Jmol 11.1.40 and I'm pretty sure 11.1.38_dev the command load append seems to negate the calculated secondary structure of the originally loaded file. Scripts on the way, Bob. Frieda /// Frieda Reichsman Molecules in Motion Interactive Molecular Stru

[Jmol-users] how to get frames from the movie

Hi all, I have few movies prepared on jmol and playing in the web browser using java applet. Now, I want to have few particular frames of the movies. Could someone help me with that? Thanks, -Balram - This SF.net email is

[Jmol-users] problem with old tutorial

Hi, I have a tutorial that worked about 1 year ago with no problems. I just re-uploaded it and get this error: load: class JmolApplet not found. java.lang.ClassNotFoundException: JmolApplet at sun.applet.AppletClassLoader.findClass(AppletClassLoader.java:168) at java.lang.ClassL

[Jmol-users] bug in set picking draw

There appears to be a bug in set picking draw. In 11.0.2 the three vertices of the arrow are displayed, but shift + mouse drags the entire arrow, not just the vertex selected. In 11.1.39, the three vertices are highlighted, but shift + mouse had no effect. Thanks, Rick -

Re: [Jmol-users] Sidechain H-bonds?

Thank you, David. Yes, I agree completely. An interesting aspect of Jmol is that it is a mix of implementing what others have successfully done elsewhere and innovating totally new ways of doing things that either haven't ever been done or haven't ever been done effectively. In every case what

Re: [Jmol-users] Reg. loading Ligand pdb files directly from pdb

On May 16, 2007, at 6:54 AM, Paul Pillot wrote: > 111 is not a proper pdb code (4 chars, the first one must be a > letter). > Try 1crn instead. > Paul > > saravanan a écrit : > >> I used jmol 11.1.39 for lading protein pdb files directly from RCSB, >> but when i tried to load the ligand pdb file

Re: [Jmol-users] Reg. loading Ligand pdb files directly from pdb

111 is not a proper pdb code (4 chars, the first one must be a letter). Try 1crn instead. Paul saravanan a écrit : > I used jmol 11.1.39 for lading protein pdb files directly from RCSB, > but when i tried to load the ligand pdb files from RCSB, its not working.. > *load =111.pdb* > Getting error

Re: [Jmol-users] Sidechain H-bonds?

Thanks, Bob, for specific suggestions for using the H-bond data in our database to display sidechain mainchain H-bonds in motifs. I'll have to consider the best way to proceed within the constraints of our setup. As a general comment, however, I would say that I appreciate that Jmol is in a di

Re: [Jmol-users] Reg, opening files directly form RCSB

Hi Saravanan: > When i try to load the pdb file from console like > load "=1crn" > I have to use jmol 11.1.39 ? Yes! > Is it possible to open pdb file without displaying inputbox, > command button and from hyperlink in this page... i will pass the > pdbcode from another page to this page