Re: [Jmol-users] Save/load state command

2008-07-16 Thread Angel Herraez
I also think that a fixed path is not good. However, from Nick's quote # Jmol state version 11.4.4 2007-12-20 06:37; # fullName = jmolApplet0[343951889313757]; # documentBase = file:/Users/ngreeves/Sites/external/JmolPopup.htm; # codeBase = file:/Users/ngreeves/Sites/external/; The

[Jmol-users] Save/load state command

2008-07-16 Thread Nick Greeves
Good point Angel, The load command also shows different behaviour on a website (Bob's) or in Dreamweaver. Web: load /*file*/http://chemapps.stolaf.edu/jmol/docs/examples-11/data/quartz.cif {1.0 1.0 1.0}; DW: load /*file*/file:/Volumes/nggroup/external/test/histidine.cif; (this is on Mac OS

Re: [Jmol-users] Save/load state command

2008-07-16 Thread Angel Herraez
Web: load /*file*/http://chemapps.stolaf.edu/jmol/docs/examples- 11/data/quartz.cif {1.0 1.0 1.0}; DW:load /*file*/file:/Volumes/nggroup/external/test/histidine.cif; (this is on Mac OS X) Both fixed paths. Yes. I now remember seing this before, though I don't use state often. The

Re: [Jmol-users] Save/load state command

2008-07-16 Thread Bob Hanson
right now, that's an intended limitation of the state functionality. The EXACT state is saved -- which means the exact files are read. No relative paths. My conclusions after much consideration, particularly with Jmol Protein Explorer, is that files read from disk are problematic, (because,

Re: [Jmol-users] 11.5.45 message to messageCallback failure

2008-07-16 Thread Bob Hanson
# message now goes to the messageCallback queue only, not the console. But it does sound like a bug. Eric Martz wrote: In Jmol applet 11.5.42 and earlier, message xxx displays xxx in the Jmol console, and also sends it to messageCalback. I use this to send control marker strings to

Re: [Jmol-users] 11.5.45 message to messageCallback failure

2008-07-16 Thread Bob Hanson
# message oh -- that's when debugScript is on. Eric Martz wrote: In Jmol applet 11.5.42 and earlier, message xxx displays xxx in the Jmol console, and also sends it to messageCalback. I use this to send control marker strings to messageCallback that trigger execution of subsequent code.

Re: [Jmol-users] 3D Molecule Viewer on the iPhone

2008-07-16 Thread Bob Hanson
I'm expecting this latest I-phone upgrade will open up all sorts of possibilities. Anyone know what Java is being put on there? Angel Herráez wrote: I just found this note in Rich Apodaca's blog: a piece of software for viewing molecules 3D on the iPhone, including proteins form PDB!