Re: [Jmol-users] Out of Memory Error Handling

2008-12-02 Thread Robert Hanson
Jmol users: I think we have some reasonable out-of-memory error handling now. In this business nothing is perfect, but please check out http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm and files in http://chemapps.stolaf.edu/jmol/docs/examples-11/jmol-11.jar Jmol 11.7.16 now tries

Re: [Jmol-users] measure allconnected angles

2008-12-02 Thread Xavier Prat-Resina
It works! Thanks Bob Xavier On Tue, Dec 2, 2008 at 2:36 PM, Robert Hanson <[EMAIL PROTECTED]> wrote: > Thanks -- that's a bug in Jmol 11.6. Now fixed in 11.7.15 and 11.6.9 > > > > On Tue, Dec 2, 2008 at 1:57 PM, Xavier Prat-Resina <[EMAIL PROTECTED]> > wrote: > > Dear jmol-users, > > > > I was w

Re: [Jmol-users] measure allconnected angles

2008-12-02 Thread Robert Hanson
Thanks -- that's a bug in Jmol 11.6. Now fixed in 11.7.15 and 11.6.9 On Tue, Dec 2, 2008 at 1:57 PM, Xavier Prat-Resina <[EMAIL PROTECTED]> wrote: > Dear jmol-users, > > I was wondering if there is an easy way to measure all angles involved in a > bond. > When I apply "measure allconnected (*)(*

[Jmol-users] measure allconnected angles

2008-12-02 Thread Xavier Prat-Resina
Dear jmol-users, I was wondering if there is an easy way to measure all angles involved in a bond. When I apply "measure allconnected (*)(*)(*)" to water I get the two angles HHO, but not the HOH. The documentation says: *measure allconnected (*/3) (*/3) (*/3) will measure every angle associated

[Jmol-users] Open a file in a blocked way with org.jmol.api.JmolSimpleViewer

2008-12-02 Thread Duan Lian
Hi all, I'm trying to integrate JmolSimpleViewer to a web project which need to export protein image. I used a BufferedImage to render on, with the source below. (Actually it's groovy code, but it doesn't matters.) BufferedImage bffImg = new BufferedImage(width, height, BufferedImage.TYP