Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Robert Hanson
Thanks, Phillip. Yes, I'm starting biomolecules in organic class and thought this might be of help. We're doing carbohydrates right now, and I think I'll have fun with the Fischer projection business. Kind of crazy, of course, but it might be fun. I've souped it up a bit today so that it is better

Re: [Jmol-users] moveto transition data

2009-04-18 Thread Robert Hanson
We should probably write this up. Yes, this is precisely what quaternions can get you. # set to final state moveto 0.0 { -46 -870 492 142.18} 300.0 0.0 0.0 {61.260506 38.7915 44.659} 50.97134 {0.0 0.0 0.0} 281.9351 50.269466 50.0 qfinal = quaternion(script("show rotation")) # set to initial state

Re: [Jmol-users] moveto transition data

2009-04-18 Thread rgb
Ralf Stephan wrote: > Hello, > let's say I have two orientations and want to write 50 > intermediate frames as image files: > > ---From: > moveto 0.0 { -142 866 480 107.35} 100.0 0.0 0.0 {61.260506 38.7915 > 44.659} 50.97134 {0.0 0.0 0.0} 8.481314 102.86942 50.0; > ---To: > moveto 2.0 { -46 -870 49

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Philip Bays
Ok. Got it going by clearing both the cache and the history.Boy this is cool. Wish I had had it last week for class:-( On Apr 18, 2009, at 12:38 PM, Philip Bays wrote: That is what I observe on mine as well. The applet does not load. So let's look at configurations: I am runni

[Jmol-users] support for isotopes

2009-04-18 Thread Angel Herráez
Jmol users, I am digging a little bit more on support for isotopes. If you are interested on this topic, please check out this link http://biomodel.uah.es/Jmol/isotopes/ which is a testing page to see what we have. Some things work, others not so much. That way, we can get clues of what needs t

Re: [Jmol-users] moveto transition data

2009-04-18 Thread Frieda Reichsman
Have you tried a screen capture program such as Jing, Captivate, SnapZ Pro, or Camtasia? Frieda On Apr 18, 2009, at 12:32 PM, Ralf Stephan wrote: > Hello, > let's say I have two orientations and want to write 50 > intermediate frames as image files: > > ---From: > moveto 0.0 { -142 866 480 107.

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Frieda Reichsman
I am on an intel Mac running 10.5.6 and Safari 3.2.1. The applet does not load for me (same as previous attempt). Not sure what you mean by "link does not work" - what link are you referring to? However, this worked: I restarted Safari and cleared the cache, then tried to visit the page, I

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Ralf Stephan
With Firefox 3 on Linux I have to confirm manually that I trust the signature of the applet. Maybe that's why yours doesn't load it? ralf You wrote http://chemapps.stolaf.edu/jmol/docs/examples-11/carbo.htm

[Jmol-users] moveto transition data

2009-04-18 Thread Ralf Stephan
Hello, let's say I have two orientations and want to write 50 intermediate frames as image files: ---From: moveto 0.0 { -142 866 480 107.35} 100.0 0.0 0.0 {61.260506 38.7915 44.659} 50.97134 {0.0 0.0 0.0} 8.481314 102.86942 50.0; ---To: moveto 2.0 { -46 -870 492 142.18} 300.0 0.0 0.0 {61.260506 38

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Angel Herráez
If it is of any help, the page works fine in Safari 3.1 on WinXP Java 1.6.0_11 -- Stay on top of everything new and different, both inside and around Java (TM) technology - register by April 22, and save $200 on the Java

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Philip Bays
That is what I observe on mine as well. The applet does not load. So let's look at configurations: I am running on an intel Mac using OS 10.5.6 and Safari Public Beta 4. Link does not work; applet does not download. On the other hand, I have an old G4 iBook running 10.4.11 and Safari

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Frieda Reichsman
The page does not work on my machine running Safari 3.2.1 - not a beta. The applet never finishes loading. Frieda On Apr 17, 2009, at 8:58 PM, Philip Bays wrote: This page works fine on the Mac using Firefox, but not using the latest beta of Safari. Is that a problem with java in this ver

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread Angel Herráez
On 18 Apr 2009 at 10:44, rhue...@fli-leibniz.de wrote: > Those buttons don't disappear in Firefox 3.0.7 (WinXP) on my laptop. > Instead I get a dialog box that says I have to select an appropriate > molecule first (after clicking on the 'Fischer projection' button). Right. Same for me now. The

Re: [Jmol-users] carbohydrate structures

2009-04-18 Thread rhuehne
Quoting Angel Herráez : > Jeff, those buttons are displayed only for applicable molecules (linear > carbohydrates). For the others, they dissapear. > Those buttons don't disappear in Firefox 3.0.7 (WinXP) on my laptop. Instead I get a dialog box that says I have to select an appropriate molecu