[Jmol-users] multiple applets on the page

2010-03-30 Thread Frieda Reichsman
Hi, can someone please remind me of how to tell a button to send its script to more than one Jmol applet, and/or to all Jmol applets on a page? I know this is documented somewhere... Thanks, Frieda - Frieda Reichsman, PhD Senior Research Scientist The Concord Consortium http://concord.org

[Jmol-users] State Save

2010-03-30 Thread Otis Rothenberger
Bob, I using the ability to save state toward two ends in our Jmol model kit (aka Jmol molecular editor): An editor undo and a means for users to exchange edited models. I have no problem with the state code running if the built model starts with a model loaded from a server file, but if the built

Re: [Jmol-users] Can jmol read and display GROMACS output?

2010-03-30 Thread Angel Herráez
Hi Peter Yes, Jmol can open .gro files. I'm not sure though if there is more than one format output by GROMACS. http://wiki.jmol.org/index.php/File_formats/Coordinates#GROMACS I used gro files coming from a molecular dynamics calculation once, but at the time Jmol still couldn't cope with the

Re: [Jmol-users] Visualising potential energy surfaces

2010-03-30 Thread Angel Herráez
I've never attempted f(w,x,y,z) directly, but you can assign custom properties to atoms, so the xyz could be coordinates and the 4th datum be assigned to a property, and later used e.g. for a color. See "atom properties" in the Scripting Documentation http://www.stolaf.edu/academics/chemapps/j