[Jmol-users] what is the reverse operation of jmolLoadInline?

2010-04-20 Thread Francois Nguyen
Hi all. I started playing with jmol a few weeks ago and I find it very nice. I set the structure from a CTfile (molfile) stored in a string in javascript. I set it to jmol using jmolLoadInline and it works well. However I can't find the way to get the data back from jmol as a molfile. I found

[Jmol-users] MO display problem

2010-04-20 Thread Otis Rothenberger
In Jmol 12.0.RC6_dev, I'm seeing peculiar behavior of MO's. Once displayed, the MO's disappear and reappear at various positions during mouse rotation or the spin command. The script load ../meps/alkene!1-butene_mo.mol;mo 1;spin in the script text field (followed by clicking Run) on the follow

Re: [Jmol-users] Java security warnings

2010-04-20 Thread Robert Hanson
It does take a few seconds after closing Firefox for it to COMPLETELY unload, also be absolutely sure you have closed all windows, including the error console. Bob On Mon, Apr 19, 2010 at 3:55 PM, Wayne Decatur wrote: > The most troubling thing I find about the new Java security warnings is >

Re: [Jmol-users] Java security warnings

2010-04-20 Thread Angel Herráez
OK, problem solved, but no clues as to the cause. 1. It was not a Jmol problem; I saw it with other applets. 2. It was a problem only in one of my 2 computers. But there are reports in the web of the same problem. One of them says "some of our users are observing it, others not". 3. I cleared

Re: [Jmol-users] Jmol JAVA cache problem

2010-04-20 Thread Angel Herráez
Hi Bin > http://wiki.jmol.org/index.php?title=Troubleshooting/Java_Problems > > I was wondering there is an automatic way to do that? That is, users do not > need to clear java > cache manually. I don't think so, but doing this is not regularly necessary. What is the problem ("display issue")