Re: [Jmol-users] Minimize Seems to be Broken Jmol 12.0.RC13_dev

2010-05-22 Thread Otis Rothenberger
Bob, That fixes it. The dragMinimize feature brings a lot of utility to the model editor - invert configuration, create a twisted boat, tidy up a model that UFF did not get quite right (The work arounds are gone.), quickly create a cisoid conformation for a ring closure, just to name a few.

Re: [Jmol-users] Minimize Seems to be Broken Jmol 12.0.RC13_dev

2010-05-22 Thread Robert Hanson
Otis, that should be fixed now for http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip On Fri, May 21, 2010 at 8:02 PM, Otis Rothenberger wrote: > Bob, > > Earlier today you fixed a problem with Jmol 12.0.RC13_dev. Specifically, > minimize seemed to be broken on the initial load. That fi

Re: [Jmol-users] Uses for MDL Sculpt

2010-05-22 Thread Robert Hanson
When you are using the unsigned applet locally, all files loaded must come from the directory containing the JAR file or a subdirectory of that. So you are doing: \mydir\jmol\JmolApplet0.jar \mydir\cc.pdb That's not allowed on a local machine. I recommend using the signed applet. Cha

Re: [Jmol-users] problem creating webpage [was: Uses for MDL Sculpt]

2010-05-22 Thread Angel Herráez
Hi again, Maurice Please, use the jmol-users list for replies, so everyone can follow the discussion (it may be helpful to others) On 22 May 2010 at 14:24, Maurice Schroff wrote: > However, I tried to locate the "cc.pdb" in a sub-directory named > "ordner1" and then altered the code: >

[Jmol-users] problem creating webpage [was: Uses for MDL Sculpt]

2010-05-22 Thread Angel Herráez
Hello, Maurice Your problem seems to be related to the location of files. I assume you are testing your page from local disk. Java imposes some restrictions for security (this is explained in the docs), so you cannot have your molecule file in a folder that is NOT below the folder where the a

Re: [Jmol-users] Uses for MDL Sculpt

2010-05-22 Thread Maurice Schroff
Dear Dr. Henson, as I get the e-mails of the Jmol mailing list I thought of asking a probably very easy question for you to answer. As I am currently working on a presentation on Jmol for my Abitur (Germany), I would like to create a Jmol-webpage. To try this out I copied the source code of http:/