[Jmol-users] Model Kit Mode and Hover

2010-06-04 Thread Otis Rothenberger
Bob, I use a hover call back to independently select then mouse rotate/translate individual models in the Jmol window. If a call model kit mode prior to setting up a rotate/translate, then the model kit mode hover selection circles persist even though model kit mode is turned off prior to call

Re: [Jmol-users] Multiple, discontinuous models

2010-06-04 Thread Angel Herráez
Yeah, there it is: frame all; display 1.2,1.4,1.6 or frame all; display model=2,model=4,model=6 or frame all; display */2,*/4,*/6 -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaw

Re: [Jmol-users] Multiple, discontinuous models

2010-06-04 Thread Angel Herráez
Craig, I'm speaking on some recollection, haven't tested this, but I think you can do this way: frame all; display */2,*/4,*/6; There shoul also be an alternative "model=n" syntax of some sort. Why do you say that display & hde do not apply to models? They should ---

[Jmol-users] Multiple, discontinuous models

2010-06-04 Thread Craig T Martin
Greetings, I've aligned a good number of different structures of T7 RNA polymerase at various stages of transcription and then set them all as individual models in one file. Thus, when I select an active site residue for example, and color it, it applies across models. I can then set up a ra

Re: [Jmol-users] JmolSmilesApplet

2010-06-04 Thread william reusch
Bob, I've been using the new JmolSmilesApplet with excellent results. I just encountered a curious failure to distinguish between a non-stereo smiles string and a stereo string. Using your Universal SMILES String comparator, if you draw cis-1,3-dichlorocyclohexane in the "Correct Answer"d

Re: [Jmol-users] Applet 'randomly' restarts

2010-06-04 Thread Angel Herráez
Helo Alexander There is a classical warning that applets should not be resized too often, but with recent browsers I've never seen any problem in continuous resize of JmolApplet. Unless you are somehow setting the size to zero (temporarily). Depending on the browser, zero-size applets are

[Jmol-users] Applet 'randomly' restarts

2010-06-04 Thread Alexander Rose
Hi all, I have no stripped down version of my problem, but I want to ask you nevertheless, maybe you can give me some pointers. What happens: I have a web-page with a Jmol applet with dimensions given in %. The applet is inside a div, which gets resized by some javascript, so that the applet i