Re: [Jmol-users] testing, testing!

2010-07-26 Thread Van der Lee
Bob, I tracked down the ellipsoid problem when generating 3D-pdf files. As soon as 'spacefill ADPmin 50%' is given, the generated idtf-file output becomes incredibly huge - over 2Mbyte for a small-molecule structure - to be compared with about 100 Kbyte before the spacefill ADPmin command. Ari

Re: [Jmol-users] Old File

2010-07-26 Thread Philip Bays
Thanks Bob. I agree. At least we have confirmed and narrowed the issue down some. Phil On Jul 25, 2010, at 11:43 PM, Robert Hanson wrote: > OK, so perhaps it goes back as far as Firefox 3.6.0 or 3.6.2. Hopefully > someone at Mozilla will take this on. It's not going to be just Jmol > >

Re: [Jmol-users] testing, testing!

2010-07-26 Thread Robert Hanson
There might be optimization I could still do with ellipsoids. Let me take a look. On Mon, Jul 26, 2010 at 2:49 AM, Van der Lee wrote: > Bob, > > I tracked down the ellipsoid problem when generating 3D-pdf files. > As soon as 'spacefill ADPmin 50%' is given, the generated idtf-file > output become

Re: [Jmol-users] testing, testing!

2010-07-26 Thread Robert Hanson
Hmm. I'm not seeing that at all. Very small, very efficient IDTF files. Send me an example. Preferably as a PNG image of the state along with the data file. On Mon, Jul 26, 2010 at 6:53 AM, Robert Hanson wrote: > There might be optimization I could still do with ellipsoids. Let me take a > look.

Re: [Jmol-users] Error message under linux

2010-07-26 Thread FyD
Dear Bob, > try > jmolInitialize("$path/jmol", "JmolApplet.jar"); It looks like jmolInitialize("$path/jmol", "JmolApplet.jar"); is required for Opera but not for Firefox and Chrome. Do you know why ? thanks, regards, Francois

Re: [Jmol-users] a syntax question

2010-07-26 Thread Pshemak Maslak
On 7/22/2010 7:32 PM, Robert Hanson wrote: Jmol and JavaScript have the same quotation mark rules -- '...' or "..."'..."...' is ok, "...'" is ok, '...\'' or "...\"..." are ok. In HTML tag attributes, you can't use \' or \". I strongly recommend going to 12.0 despite the fact that

Re: [Jmol-users] testing, testing!

2010-07-26 Thread Van der Lee
This - taken from the Jmol wiki - does work under RC26, but not with RC28 for (var i=0; i<240; i=i+1) write image 200 200 @{"movie" + ("" + i)[-3][0] + ".gif"} /* 200 and 200 are width and height */ rotate axisangle {1 0 0} 1.5 /* axis is defined by X Y Z lengths between braces

Re: [Jmol-users] testing, testing!

2010-07-26 Thread Robert Hanson
It's a bug introduced in RC27. Thanks very much for finding that. Will upload soon. On Mon, Jul 26, 2010 at 8:11 AM, Van der Lee wrote: > This - taken from the Jmol wiki - does work under RC26, but not with RC28 > > for (var i=0; i<240; i=i+1) > write image 200 200 @{"movie" + ("" + i)[-3][

Re: [Jmol-users] Error message under linux

2010-07-26 Thread Robert Hanson
I don't think that is correct. Not sure what "$path" is all about -- were you just putting that in there in place of what it really is? Opera does not require jmolInitialize any more than the other browsers. At least in my hands. What is your observation, and what version of Opera? http://chemapp