Re: [Jmol-users] Possible problem with the representation of a double bond

2010-09-08 Thread Robert Hanson
[should move this to Jmol-Developers list...] Jay, before you go after this, I'd like to hear what you expect to observe under various conditions -- A --- bond is vertical and is rotated along its axis. B --- bond is vertical and is rotated perpendicular to its axis until it is pointing into the

Re: [Jmol-users] Possible problem with the representation of a double bond

2010-09-08 Thread Shore, Jay
Thank you Bob for your thorough explanation. I think that I finally understand. While jmol's biggest advantage may be with its ability to let users interact with structures, it is also an excellent tool for making movie, especially with the povray export. If I wanted to make a movie of a mol

Re: [Jmol-users] Please release 12.0.12

2010-09-08 Thread Nicolas Vervelle
I am currently releasing it. Files are already available. Nico On Wed, Sep 8, 2010 at 7:10 PM, Eric Martz wrote: > Dear Bob and Nico, > > I would appreciate the quick release of 12.0.12. I want to release a > new tutorial on Major Histocompatibility and some fixes made since > 12.0.11 are import

[Jmol-users] Please release 12.0.12

2010-09-08 Thread Eric Martz
Dear Bob and Nico, I would appreciate the quick release of 12.0.12. I want to release a new tutorial on Major Histocompatibility and some fixes made since 12.0.11 are important. I am preparing for the Workshop in Biochemical Education in Cordoba, Spain, for which I am departing on Saturday. Th

Re: [Jmol-users] how to remove white lines in array

2010-09-08 Thread Robert Hanson
maybe script = script.replace("\n\n","\n") ? On Wed, Sep 8, 2010 at 8:16 AM, P.Canepa wrote: > > Hi there, > > is any hidden :) Jmol command to remove blank lines once in a Jmol > array? > > for instance white lines appear in such cases : var script =" var array = > [" + varA + ", " + var

[Jmol-users] how to remove white lines in array

2010-09-08 Thread P . Canepa
Hi there, is any hidden :) Jmol command to remove blank lines once in a Jmol array? for instance white lines appear in such cases : var script =" var array = [" + varA + ", " + varB + ", ' " varC + " ']; "

Re: [Jmol-users] jmolScriptWait causes exception in 12.1 branch

2010-09-08 Thread Robert Hanson
except I forgot to update that file -- it's correct now. On Tue, Sep 7, 2010 at 10:03 PM, Robert Hanson wrote: > This is fixed for Jmol 12.1.10 and 12.0.12, to be released soon. > > 12.1.10 can be found at > http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip > > Bob > > > > > -- > Robe