Re: [Jmol-users] Jmol and DSSP

2010-10-01 Thread gilleain torrance
Hi, Yes, I would be very interested in this. However I warn you against actually reading the dssp source as it was translated from fortran with f2c and was pretty unreadable, as far as I remember :) gilleain On Fri, Oct 1, 2010 at 4:30 AM, Robert Hanson hans...@stolaf.edu wrote: Jmol users

[Jmol-users] insert into database

2010-10-01 Thread Aiswarya Pawar
hi, am creating a database so i would like to incorporate Jmol into the database but for that i have to write a script which would should show each molecule in Jmol when clicked upon the molecule. please if anyone has a script on how to load the particular molecule, i know the script for a

Re: [Jmol-users] insert into database

2010-10-01 Thread Angel Herráez
Hello Aiswarya It can be done, but very much depends on how your database is organized and you query it. Please provide a sample page or page source code so we can give you some advice on specific terms. - The script for many molecules would be the same as for one. Or do you want to load

Re: [Jmol-users] Jmol and DSSP

2010-10-01 Thread Robert Hanson
The coding is done. I'm using a totally different approach to the coding, not just a translation of Pascal to C to Java. MUCH simpler! Bob On Fri, Oct 1, 2010 at 2:11 AM, gilleain torrance gilleain.torra...@gmail.com wrote: Hi, Yes, I would be very interested in this. However I warn you

Re: [Jmol-users] Jmol and DSSP

2010-10-01 Thread Thomas Stout
a big YES from here too! That would be great -Tom On Thu, Sep 30, 2010 at 8:30 PM, Robert Hanson hans...@stolaf.edu wrote: Jmol users interested in protein visualization: Is there any interest in having Jmol be able to calculate (verifiably proper) DSSP secondary structure for proteins --

[Jmol-users] drawing cones

2010-10-01 Thread Pshemak Maslak
How can I draw open right cones in Jmole? For example, how can draw the double cone for nodal surface of 3d(z^2) orbital? Thanks, for your help. PM -- Start uncovering the many advantages of virtual appliances and

Re: [Jmol-users] drawing cones

2010-10-01 Thread Robert Hanson
Sorry, no good way to do that. On Fri, Oct 1, 2010 at 4:03 PM, Pshemak Maslak p...@chem.psu.edu wrote: How can I draw open right cones in Jmole? For example, how can draw the double cone for nodal surface of 3d(z^2) orbital? Thanks, for your help. PM

[Jmol-users] drawing cones

2010-10-01 Thread Robert Hanson
I lied. OK, see the JVXL file at http://stolaf.edu/people/hansonr/chemapps/jmol/docs/misc/cone.jvxl for a the surface z = sqrt(x^2 + y^2). Because it is a JVXL file, you can go in and change the axes, change the scaling, change the origin, etc., and have any cone you want. Even elliptical cones.