[Jmol-users] bug in Jmol Version 12.0.18

2010-10-14 Thread Andreas Prlic
Hi, I just tried to upgrade our Jmol installation to 12.0.18 (binary download), but I noticed the following problem (e.g. PDB ID 3CDZ ) Exception in thread "QueueThread1" java.lang.ClassCastException: java.lang.String cannot be cast to java.util.BitSet at org.jmol.modelset.AtomCollection.getA

[Jmol-users] Jmol 12.0.18 and 12.1.15 released

2010-10-14 Thread Robert Hanson
Jmol users interested in protein visualization, I've just released Jmol 12.0.18 and 12.1.15. These both have added features -- specifically DSSP and an assortment of related commands. In addition, there are some bug fixes. There are TWO FEATURE CHANGES: 1) For PDB or mmCIF files that contain no

Re: [Jmol-users] JME e Jmol in wordpress

2010-10-14 Thread Angel Herráez
> Hi, i forgot to tell that i had to use the tag to insert > Jmol. WIth the Javascript code it doesn't work, giving always the error > JmolAplet.class not found. Maybe it cannot find Jmol.js? Usually, when Jmol.js is not found the error is "jmolInitialize() is not defined" The potential pro

Re: [Jmol-users] JME and Jmol in wordpress

2010-10-14 Thread Angel Herráez
Wonderful, Pino! Bravissimo! I'm glad that you could make it work. Congratulations. It will be appreciated by other users if you write the details relevant to how to configure WordPress for JmolApplet (and maybe JME applet) in the wiki, http://wiki.jmol.org/index.php/Jmol_in_Wikis_and_Blogs

[Jmol-users] JME e Jmol in wordpress

2010-10-14 Thread Mio_libero
Hi, i forgot to tell that i had to use the tag to insert Jmol. WIth the Javascript code it doesn't work, giving always the error JmolAplet.class not found. Maybe it cannot find Jmol.js? Pino -- Beautiful is writing sa

Re: [Jmol-users] load append problem

2010-10-14 Thread Robert Hanson
ouch! OK... On Wed, Oct 13, 2010 at 8:32 PM, Otis Rothenberger wrote: > Bob, > > In version 12.1.15_dev, load append appears to be broken if it is > preceded by "set appendNew false." > > The default load append into frames works. The "set appendNew false" > seems to be the problem. > > Otis > >