Oh, I see.
I don't have a strong feeling about this. You can leave it as it is.
I was mostly thinking on documentation (colors page at website)
Any opinions on this from other users?
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Dear Jmol users:
I would like your opinion about a new entry in the Jmol application
top menubar.
I have added **Available in the next 12.1.x release**
File Reload
that, right now, calls the command
load
(that is, reloads the current model)
Bob has mentioned that it could do
While in the lab with my class using Jmol, students made me notice
that after using distance and angle measurements, They could drag the
molecule keeping just the left buttom pressed.
Is it a bug or normal behaviour? I had to reload the page to resume the
normal mouse behaviour
Pino
How do you usually drag the molecule?
On Mon, Oct 18, 2010 at 6:17 AM, Mio_libero pino.stricc...@libero.itwrote:
While in the lab with my class using Jmol, students made me notice
that after using distance and angle measurements, They could drag the
molecule keeping just the left buttom
The two suggestions for reload are:
a) load
b) load ... (whatever that last load command was)
Not sure what this would do if the last load command was an APPEND.
Bob
2010/10/18 Angel Herráez angel.herr...@uah.es
Dear Jmol users:
I would like your opinion about a new entry in the
Otis,
I don't know. Everything there looks fine to me. A little tricky having the
timeout there as well. You're getting information three or four different
times, all asynchronously. Not a great idea, if you ask me. So we have:
loadApplet
--- Javascript:JmolInit()
JmolInit()
-- JmolScript()
How do you usually drag the molecule?
Ctrl + rightDrag
or
double-clic and drag
as far as I remember, there are no other ways
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oh, you mean TRANSLATE. Let me know if you can figure out how to reproduce
that.
2010/10/18 Angel Herráez angel.herr...@uah.es
How do you usually drag the molecule?
Ctrl + rightDrag
or
double-clic and drag
as far as I remember, there are no other ways
Hi Bob,
Just a quick follow up to confirm that this was indeed a browser caching
issue and that the new build works fine...
Thanks for your help,
Andreas
On Fri, Oct 15, 2010 at 1:44 PM, Robert Hanson hans...@stolaf.edu wrote:
Andreas, I really don't think it's Jmol.
What you need to do
Bob,
I know that I need to try to get rid of those JavaScript timeouts. The
construct jmolScriptWait(scpt) sounds interesting. I'm not familiar with
it. In the following example, what is jmolScriptWait(scpt) waiting for?
Is it that scpt does not execute until all of the subsequent JavaScript
Piero,
Try this for now as a Jmol script.
function zAdd(type, dist, a, ang, b, tor, c) {
/*
adds an atom x connected to A and distance DIST from A
with angle ANG for x-A-B and dihedral TOR for x-A-B-C
Note: If a or b or c is a coordinate, such as {1 2 1},
and we have fractional
I have two questions about secondary structure:
1. In the lastest versions of Jmol, including 12.0.18, there are two
different colors for helices, most of them magenta as before but some,
mostly short helices, a shade of purple. What is the significance of
the two colors? Are the purple ones
That's great
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Please consider the environment before printing this e-mail.
Pieremanuele Canepa
Room 104
Functional Material Group
School of Physical Sciences, Ingram Building,
University of Kent, Canterbury, Kent,
CT2 7NH
United Kingdom
e-mail: pc...@kent.ac.uk
mobile: +44 (0) 7772-9756456
ps: If you want to do that smoothly over 1 second, you would use this (all
in one line now):
var M = {_S}
var A = {atomno=2}
var B = {atomno=5}
# (or whatever)
spin @{quaternion({1 0 0}, 90) * (!quaternion(M, A, B)) *
(!quaternion(script(show rotation)))} -1
On Mon, Oct 18, 2010 at 11:26
Hi Jeff
1. In the lastest versions of Jmol, including 12.0.18, there are two
different colors for helices, most of them magenta as before but some,
mostly short helices, a shade of purple. What is the significance of
the two colors? Are the purple ones variant (e.g. 3-10) helices? Does
Jeff,
On Mon, Oct 18, 2010 at 11:27 AM, Jeff Cohlberg cohlb...@csulb.edu wrote:
I have two questions about secondary structure:
1. In the lastest versions of Jmol, including 12.0.18, there are two
different colors for helices, most of them magenta as before but some,
mostly short helices, a
OK,
I think that is doing something, but not quite.
Here is a website along the lines of what I would like to try to do.
http://www.wellesley.edu/Chemistry/Flick/ligandfield.html
It is a jmol page and if you click on the octahedral filed, then the point
charges are located such that the align
You'll have to give me a specific example. Flick is using Jmol 11.6 there,
but if you upgrade it to 12.1 using:
http://www.wellesley.edu/Chemistry/Flick/ligandfield.html?JMOLJAR=http://chemapps.stolaf.edu/jmol/docs/examples-12/JmolAppletSigned0.jar
then you can see what I am talking about.
I used to drag the molecule with control and leftkey, if i remeber
well. or with right click. With just the left button pressed, i could
not translate the molecule usually.
Pino
How do you usually drag the molecule?
On Mon, Oct 18, 2010 at 6:17 AM, Mio_libero pino.stricc...@libero.it
Jmol Version?
Can you now reproduce the problem?
On Mon, Oct 18, 2010 at 6:17 AM, Mio_libero pino.stricc...@libero.itwrote:
While in the lab with my class using Jmol, students made me notice
that after using distance and angle measurements, They could drag the
molecule keeping just the left
Robert, Angel has already remembered the way to translate the
molecule. i tried again to reproduce that problem but until now
everything seems normal. The issue comes out after making measures of
angles. Keeping the left mouse pressed simply drags the molecule around.
Maybe a problem of local
Check the version -- we did have an issue like that some time ago. It wasn't
measurements, but I could imagine that your students thought it was, just
because that is what they were doing. More likely it had to do with moving
the mouse out of Jmol across the right-hand edge of the applet in order
Bob,
I found the jmolScriptWait(scpt) documentation on the jmol.js
documentation page. I had problems implementing it. There's something
I'm not getting right in my attempts.
BUT
Your terminal Jmol JavaScript command appears to be the solution to my
problem. One by one, I'm able to remove
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