Re: [Jmol-users] loading files via drag'n'drop doesn't work under Linux

2010-10-26 Thread Oliver Stueker
(ups, the first reply got stuck in the filter - sorry if anyone get's it twice) Hi, The path is correct except of the \r\n . (where the backslashes in case of the png is also switched to forward-slashes: "file:/home/stuekero/Desktop/myFile.png/r/n" ) Oliver On Tue, Oct 26, 2010 at 15:59, Olive

Re: [Jmol-users] loading files via drag'n'drop doesn't work under Linux

2010-10-26 Thread Robert Hanson
Oh, is it just the CR LF at the end? On Tue, Oct 26, 2010 at 4:29 PM, Oliver Stueker < revilo2...@users.sourceforge.net> wrote: > Hi Bob, > > Just a small bug that I noticed the other day (not urgent, just that > it won't get missed): > > Under Linux (Ubuntu 10.04 Lucid Lynx, Gnome 2.30.2) I can'

Re: [Jmol-users] loading files via drag'n'drop doesn't work under Linux

2010-10-26 Thread Robert Hanson
What's the true path to those file names that are being dragged in? On Tue, Oct 26, 2010 at 4:29 PM, Oliver Stueker < revilo2...@users.sourceforge.net> wrote: > Hi Bob, > > Just a small bug that I noticed the other day (not urgent, just that > it won't get missed): > > Under Linux (Ubuntu 10.04 L

[Jmol-users] loading files via drag'n'drop doesn't work under Linux

2010-10-26 Thread Oliver Stueker
Hi Bob, Just a small bug that I noticed the other day (not urgent, just that it won't get missed): Under Linux (Ubuntu 10.04 Lucid Lynx, Gnome 2.30.2) I can't load files via drag-and-drop: for a png I get: script ERROR: io error reading file:/home/stuekero/Desktop/myFile.png/r/n: java.io.FileNot

Re: [Jmol-users] controlling order of selected atoms

2010-10-26 Thread Oliver Stueker
Heureka!!! I've got it!!! On Tue, Oct 26, 2010 at 10:56, Oliver Stueker wrote: > Thanks Bob! > > Interestingly: When instead of using >   draw @plane_i FIXED {...@faceatoms[1]} {...@faceatoms[2]} > {...@faceatoms[3]} ; >   draw @line_i �...@{">" + i}  FIXED LENGTH 15.0 WIDTH 1.0  PERP $...@plane

Re: [Jmol-users] controlling order of selected atoms

2010-10-26 Thread Oliver Stueker
Thanks Bob! Interestingly: When instead of using draw @plane_i FIXED {...@faceatoms[1]} {...@faceatoms[2]} {...@faceatoms[3]} ; draw @line_i @{">" + i} FIXED LENGTH 15.0 WIDTH 1.0 PERP $...@plane_i ; I use draw @plane_i FIXED @{faceAtoms[1]} @{faceAtoms[2]} @{faceAtoms[3]} ; dra

Re: [Jmol-users] Several questions

2010-10-26 Thread Robert Hanson
need a concrete example. It's working for me. On Tue, Oct 26, 2010 at 9:17 AM, P.Canepa wrote: > I am sorry the structure beneath the map but not the map. I mean I don't > get the superimposed map > -- > Please consider the environment before printing this e-mail. > > Pieremanuele Canepa > Room

Re: [Jmol-users] Several questions

2010-10-26 Thread P . Canepa
It'does not work when you replicated the isosurface for crystals. I tried with a slab. -- Please consider the environment before printing this e-mail. Pieremanuele Canepa Room 104 Functional Material Group School of Physical Sciences, Ingram Building, University of Kent, Canterbury, Kent, CT2 7NH

Re: [Jmol-users] Several questions

2010-10-26 Thread P . Canepa
I am sorry the structure beneath the map but not the map. I mean I don't get the superimposed map -- Please consider the environment before printing this e-mail. Pieremanuele Canepa Room 104 Functional Material Group School of Physical Sciences, Ingram Building, University of Kent, Canterbury, Ke

Re: [Jmol-users] Several questions

2010-10-26 Thread Robert Hanson
"structure below"? PovRay export of isosurfaces works for me. On Tue, Oct 26, 2010 at 8:43 AM, P.Canepa wrote: > Does the povray export work for isosurface. Because when I try to export > them I get just the structure below. > > Is any thing in particular I should enter ? > > Thanks > -- > Plea

Re: [Jmol-users] Several questions

2010-10-26 Thread P . Canepa
Does the povray export work for isosurface. Because when I try to export them I get just the structure below. Is any thing in particular I should enter ? Thanks -- Please consider the environment before printing this e-mail. Pieremanuele Canepa Room 104 Functional Material Group School of Ph

Re: [Jmol-users] controlling order of selected atoms

2010-10-26 Thread Robert Hanson
oh -- http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip -- Nokia and AT&T present the 2010 Calling All Innovators-North America contest Create new apps & games for the Nokia N8 for consumers in U.S. and Canada

Re: [Jmol-users] controlling order of selected atoms

2010-10-26 Thread Robert Hanson
OK, that should be fixed. It turned out that Jmol was reversing the atoms when using $ in the DRAW command. Let me know if that does not fix the problem. Send me the data file if you are still having trouble. Bob On Tue, Oct 26, 2010 at 7:57 AM, Robert Hanson wrote: > > > On Mon, Oct 25, 20

Re: [Jmol-users] controlling order of selected atoms

2010-10-26 Thread Robert Hanson
On Mon, Oct 25, 2010 at 4:44 PM, Oliver Stueker < revilo2...@users.sourceforge.net> wrote: > > I'm using an array to store the atoms that define a plane in the order > that I want: > > faceDefs = [ [ {2807:*/1.1} , {2786:*/1.1} , {2813:*/1.1} ] , /* face 1 > */ > [ {2757:*/1.1} , {27

Re: [Jmol-users] Several questions

2010-10-26 Thread Robert Hanson
The atom in the plane is returned by within(0, ) I believe. On Tue, Oct 26, 2010 at 3:57 AM, P.Canepa wrote: > I am sorry, it just works great! I was wondering if I want to leave atom in > the plane and remove only the atom above or below. it's there any way to > exclude them ? > > Secondl

Re: [Jmol-users] Several questions

2010-10-26 Thread P . Canepa
Thanks Angel . Can you give me more info? You probably didn't see it yesterday. Could you please add to the wiki page ? I would like to inform you that I have released my first project, which entirely relies on Jmol. Its name is J-ICE which stand for: a Jmol interface for crystallographic and

Re: [Jmol-users] Several questions

2010-10-26 Thread Angel Herráez
Hi Piero > I'd like to draw a sphere of > radius distance around the point. Is it possible ? Yes, use the DRAW command > I know there is an option for isosurface, can I use it ? Probably you can too, but draw is easier ---

Re: [Jmol-users] Several questions

2010-10-26 Thread P . Canepa
I am sorry, it just works great! I was wondering if I want to leave atom in the plane and remove only the atom above or below. it's there any way to exclude them ? Secondly, I have also introduce in J-ICE an option to remove atoms around an atom, something like: select within( distance, { x y