[Jmol-users] jmol and electron densities

Hi, I am just playing around with using Jmol to show electron density maps. Is there a way to restrict the display of the map to a certain atom-set ? Slab seems to work, but when I just want to see the surface around a certain residue restrict isosurface does not seem to do anything. isoSurface

Re: [Jmol-users] jmol and electron densities

Hi Andreas I have not used ED maps, but if they are isosurfaces you can generate them only for a subset of atoms. isoSurface select... does not seem to have a related option either. How not? isoSurface select(resno=24) ignore(resno!=24) molecular

Re: [Jmol-users] jmol and electron densities

I am using the feature to automatically fetch the map from the EDS server: isosurface =3NO8 ; color isosurface yellow if the restriction could be done on a map that already has been loaded that would be great, since the download is very slow Thanks, Andreas 2010/11/2 Angel Herráez

Re: [Jmol-users] jmol and electron densities

Hi, ich you use a recent jmol version from the 12.1 branch there is a command Jmol 12.1.4 adds a new option for isosurface that allows you to select parts of the isosurface for viewing AFTER isosurface creation. isosurface display all redisplays all points.

Re: [Jmol-users] jmol and electron densities

That's exactly why we set this up -- get the electron map once; display it within various atoms as many times as you wish. Great to see this used. Bob On Tue, Nov 2, 2010 at 11:03 AM, Alexander Rose alexander.r...@weirdbyte.de wrote: Hi, ich you use a recent jmol version from the 12.1

Re: [Jmol-users] loading files via drag'n'drop doesn't work under Linux

Hi, I found another minor Unix/Linux specific bug: When using the (tab) command-auto-completion in the Jmol Console (which by the way is really awesome and I'm still wondering why I just discovered it recently) to load a file e.g.: ~/Desktop/myFile.pdb .