Re: [Jmol-users] Extract Molfile

2010-12-30 Thread Robert Hanson
No, that's probably not possible. JME is a 2D format; there's no simple way to generate that from 3D. On Thu, Dec 30, 2010 at 2:14 PM, Otis Rothenberger wrote: > Bob, > > This probably should go on the feature request page, but I'll post a > feasibility question here. How hard would it be to set

Re: [Jmol-users] load filter biomolecule?

2010-12-30 Thread Robert Hanson
OK, that got broken in 12.0.19. Will release a fix soon. On Thu, Dec 30, 2010 at 10:13 PM, Robert Hanson wrote: > Seems to be broken in 12.0 -- works in 12.1 -- will fix. > > On Thu, Dec 30, 2010 at 5:07 PM, Eric Martz wrote: > >> 1. I cannot get this to work: >> >> load "1a4f.pdb" filter "biom

Re: [Jmol-users] load filter biomolecule?

2010-12-30 Thread Robert Hanson
Seems to be broken in 12.0 -- works in 12.1 -- will fix. On Thu, Dec 30, 2010 at 5:07 PM, Eric Martz wrote: > 1. I cannot get this to work: > > load "1a4f.pdb" filter "biomolecule 1" > > I have tried that with Jmol 12.0.25 application. Also several > variations of the syntax. I always get only t

[Jmol-users] load filter biomolecule?

2010-12-30 Thread Eric Martz
1. I cannot get this to work: load "1a4f.pdb" filter "biomolecule 1" I have tried that with Jmol 12.0.25 application. Also several variations of the syntax. I always get only the asymmetric unit. Only a single model loads. The asymmetric unit contains 2 chains. Biomolecule 1 contains 4 chai

[Jmol-users] Extract Molfile

2010-12-30 Thread Otis Rothenberger
Bob, This probably should go on the feature request page, but I'll post a feasibility question here. How hard would it be to set Extract molfile to include stereo bond information? Alternatively, could Jmol write JME files? My intention here is to retain stereo information when a Jmol model is