Re: [Jmol-users] Pairs of contacts

2011-05-10 Thread Eric Martz
Wow, this is fabulous, Bob! You and Jmol never cease to amaze me. -Eric At 5/9/11, Robert Hanson wrote: >Eric, > >How about the MEASURE command? > >measure range 0 4.0 {:B and !water} {!:B and !water} > >show measurements > >Or, if you want to work with them, then use > >Var x = getProperty("measu

Re: [Jmol-users] Question to "Load Append" in Jmol

2011-05-10 Thread Robert Hanson
Well, let's see... On Tue, May 10, 2011 at 2:16 PM, Paul Pillot < paul.pil...@ac-orleans-tours.fr> wrote: > I've tested set picking dragSelected. > - when the atoms that are part of the selections are clicked and dragged, > the selection can be rotated and dragged, which is the expected behavior

Re: [Jmol-users] serving pdbs: new error?

2011-05-10 Thread Philip Bays
Try updating to Firefox 4.0 if you have not yet done so. On the Mac this was a problem with the interaction of the previous version of Firefox with java when a structure was reloaded. That is, I have a program that randomly chooses the structure to load; it it had been previous loaded, I got

Re: [Jmol-users] Question to "Load Append" in Jmol

2011-05-10 Thread Paul Pillot
I've tested set picking dragSelected. - when the atoms that are part of the selections are clicked and dragged, the selection can be rotated and dragged, which is the expected behavior - when an atom that is not part of the selection is clicked and dragged, the selection is rotated and dragged ac

Re: [Jmol-users] serving pdbs: new error?

2011-05-10 Thread Marcey, David
Sorry for not including that info... On all: 1) Mac snow leopard; 2) Windows 7, 64 bit SP1; 3) Windows XP, SP2. Browser=Firefox. URL to try: http://www.callutheran.edu/Academic_Programs/Departments/BioDev/omm/jmol/dna/dna.html After loading and using one of the buttons in the first section, S

Re: [Jmol-users] serving pdbs: new error?

2011-05-10 Thread Philip Bays
What platform?? On May 10, 2011, at 1:34 PM, Marcey, David wrote: > I have a question concerning the serving of pdbs. Occasionally, and ONLY > occasionally, I receive the following error when trying to load or reload a > pdb in a webpage: > > "java.security.AccessControlException: access denie

[Jmol-users] serving pdbs: new error?

2011-05-10 Thread Marcey, David
I have a question concerning the serving of pdbs. Occasionally, and ONLY occasionally, I receive the following error when trying to load or reload a pdb in a webpage: "java.security.AccessControlException: access denied (java.net.socketpermission [IP address:port#] connect,resolve)" I have hea