Re: [Jmol-users] Jmol and NCIPLOT

2011-06-08 Thread Robert Hanson
not a problem that I see. I'll need to have a specific example. On Wed, Jun 8, 2011 at 9:24 AM, Rzepa Henry wrote: > > On 8 Jun 2011, at 15:09, Robert Hanson wrote: > > > I'm not going to remake the movie -- these aren't her colors anyway, > > because > > this would all be green. I just left the

Re: [Jmol-users] Jmol and NCIPLOT

2011-06-08 Thread Rzepa Henry
On 8 Jun 2011, at 15:09, Robert Hanson wrote: > I'm not going to remake the movie -- these aren't her colors anyway, > because > this would all be green. I just left the colors there because it was > more > interesting. > Bob, Between colorscheme translucent "bgyor"and FULLYLIT c

Re: [Jmol-users] Jmol and NCIPLOT

2011-06-08 Thread Rzepa Henry
On 8 Jun 2011, at 15:09, Robert Hanson wrote: > I'm not going to remake the movie -- these aren't her colors anyway, > because > this would all be green. I just left the colors there because it was > more > interesting. > I just dont want multiple colour schemes out there. Julia uses +5 to

Re: [Jmol-users] Is there command to rotate protein to show the particular residue

2011-06-08 Thread Robert Hanson
I've added some example "recipes" at http://chemapps.stolaf.edu/jmol/docs/#jmolmathjmolquaternionmath Perhaps that will suffice. -- EditLive Enterprise is the world's most technically advanced content authoring tool. Exper

Re: [Jmol-users] Jmol and NCIPLOT

2011-06-08 Thread Robert Hanson
I'm not going to remake the movie -- these aren't her colors anyway, because this would all be green. I just left the colors there because it was more interesting. On Wed, Jun 8, 2011 at 8:53 AM, Rzepa Henry wrote: > > On 8 Jun 2011, at 14:50, Robert Hanson wrote: > > > This is better: http://ww

Re: [Jmol-users] Jmol and NCIPLOT

2011-06-08 Thread Rzepa Henry
On 8 Jun 2011, at 14:50, Robert Hanson wrote: > This is better: http://www.youtube.com/watch?v=AilBZeeeETk > Bob, could you invert the rainbow? Its just that Julia uses "blue = attractive" and you are using "red = attractive"? --

Re: [Jmol-users] Jmol and NCIPLOT

2011-06-08 Thread Robert Hanson
This is better: http://www.youtube.com/watch?v=AilBZeeeETk On Wed, Jun 8, 2011 at 8:41 AM, Robert Hanson wrote: > noncovalent interactions are not viewable in Jmol -- or at least will be, > once the next version is released. Currently only in > http://chemapps.stolaf.edu/jmol/docs/examples-12/Jm

[Jmol-users] Jmol and NCIPLOT

2011-06-08 Thread Robert Hanson
noncovalent interactions are not viewable in Jmol -- or at least will be, once the next version is released. Currently only in http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip But here's a teaser: http://www.youtube.com/watch?v=ZM_KFjHRGXQ Created with this script using Jmol 12.1.49_d

Re: [Jmol-users] Is there command to rotate protein to show the particular residue

2011-06-08 Thread Angel Herráez
The problem I see is, the invisible atom, the vector, the axes, all rotate together with the model! So, Z axis only faces the viewer at the beginning. As soon as you rotate, Z axis is not a reference any more. That's why Bob speaks about quaternions as internal mini axes. --