Hi,
I can't find any script snippets on how to display only a single chain
of an entire protein. E.g. Insulin (PDB: 4INS) has two compounds with
each having 2 chains. How can I hide/display the chains independently.
Kind regards,
Andreas
Hi Andreas
You need to find out the chain IDs (usually A, B ... but not always)
Then
display *:A; // will also hide all the others
display add *:A; // makes A visible without hiding others
etc.
Check the DISPLAY and HIDE commands in the documentation
Thank you very much. But hiding/displaying of protein chains is not
documented.
Kind regards,
Andreas
Am 25.09.2012 15:18, schrieb Angel Herráez:
Hi Andreas
You need to find out the chain IDs (usually A, B ... but not always)
Then
display *:A; // will also hide all the others
display
Sorry, hiding and displaying of ANYTHING is documented. You just
combine display command with atom expressions, which are described in
the doc (and used by most commands).
Good luck!
--
Live Security Virtual
Yes. It's possible that my servlet that should accept the file isn't
configured quite right, but I don't understand where the
FileNotFoundException is coming from. And I don't see a POST attempt either
on firebug. I can get the state with 'show STATE' and I can ajax that back
to the server, which
Displaying NaCl (from a cif file) shows Na+ sphere bigger than that of
Cl-. I am assuming that atomic radii are use. Is there ionic radii info
in Jmol? If so, how can one display it?
PM
--
Live Security Virtual
spacefill ionic
--pb
On 09/25/12, Pshemak Maslak
wrote:
Displaying NaCl (from a cif file) shows Na+ sphere bigger than that of
Cl-. I am assuming that atomic radii are use. Is there ionic radii info
in Jmol? If so, how can one display it?
PM
it might be as simple as the final / after servlet
You tried http://./?POST? on the URL line of your browser, and it
worked? -- I mean, it found a page? (not that it would actually post
anything)
Bob
On Tue, Sep 25, 2012 at 8:37 AM, Tamas Horvath hota...@gmail.com wrote:
Yes. It's
I'm playing with CIF files for the first time myself. The radii are VdW, and
the following script components may be useful to you:
connect delete;spacefill IONIC 30%;label
Edit features in or out per your needs.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Sep 25,
9 matches
Mail list logo