Re: [Jmol-users] R: Re: R: Re: JSmol Question

2013-01-25 Thread Robert Hanson
on a local machine the directory of the HTML page must be on the path to the directory containing the data file. On a server, the data file can be on any server if the server emits (as in PHP here) header('Access-Control-Allow-Origin: *'); or it can be anywhere on the page host's server.

Re: [Jmol-users] Jmol iPad app

2013-01-25 Thread Otis Rothenberger
Bob, OK, I'll get this started from a page developers view. I certainly agree with your analysis of the Jmol success formula, and I like the Jmol app concept. In some ways, I'm a mobile device cynic, but my colleague Tom and my granddaughters are slowly changing this view. That's why I'm

Re: [Jmol-users] help - Question about JSmol

2013-01-25 Thread Jonathan Gough
Bob, I'm still having a hard time figuring this out. 1 - I believe that the following page is picking up everything from you page, and the right click menu isn't working. Would the problem be with out server or am I still missing something?

[Jmol-users] Jmol iPad app

2013-01-25 Thread Greeves, Nick
Hi Bob and Otis, I'm very interested in this idea because I'm always being asked when will there be a ChemTube3D app? but I'm not sure what an app can do that a web site can't do just as well (or better). Assuming the content that could be pulled down from suitable web sites included

Re: [Jmol-users] help - Question about JSmol

2013-01-25 Thread Angel Herráez
Hi Jonathan I don't think that download or ftp will be your problem. It is a zipfile, so the contents will not be altered during file retrieval. Make sure you are downloading the correct file, http://chemapps.stolaf.edu/jmol/jsmol.zip Then it might be a question of how it is unzipped, but I

Re: [Jmol-users] help - Question about JSmol

2013-01-25 Thread Robert Hanson
On Fri, Jan 25, 2013 at 5:28 PM, Jonathan Gough jonathan.d.go...@gmail.comwrote: Bob, I'm still having a hard time figuring this out. sounds very frustrating. I am 100% sure it is a tool you are using somewhere along the line, but not being very adept with Macs, I can't really give you much

Re: [Jmol-users] help - Question about JSmol

2013-01-25 Thread Jonathan Gough
At the moment, I am using the St. Olaf packages to trouble shoot the issues. If I can't load a simple page that utilizes your code - then in my mind there is an issue with the server I am using to host the single page, yes? I have edited the test page again, simplified the header (I think) and

Re: [Jmol-users] help - Question about JSmol

2013-01-25 Thread Jaime Prilusky
On Jan 25, 2013, at 9:00 PM, Jonathan Gough wrote: At the moment, I am using the St. Olaf packages to trouble shoot the issues. If I can't load a simple page that utilizes your code - then in my mind there is an issue with the server I am using to host the single page, yes? 'loadScript' is

Re: [Jmol-users] help - Question about JSmol

2013-01-25 Thread Angel Herráez
http://myweb.brooklyn.liu.edu/jgough/ChemResources/example3.htm I am not sure, but it is possible that this line within Info in your page j2sPath: j2s, is read as find the files in subfolder j2s of the current (i.e. this page) folder So it's no surprise that it does not load I think you

[Jmol-users] JSmol | Quirky Behavior of Zoom Command

2013-01-25 Thread Michael Evans
Hey all! In JSmol, running the zoom command results in the failure of all subsequent script commands. Apologies if this is a documented bug or if zoom hasn't been implemented yet; just wanted to bring it to everyone's attention. In the course of migrating over a bunch of pages from Jmol to JSmol

Re: [Jmol-users] Fwd: Jmol iPad app

2013-01-25 Thread Paul Pillot
I've been asked some time ago, about a facility aimed at students for combining a web textbook with the ability to interact with 3D models. The textbook could be something close to wikipedia, that is articles with links making it easy to jump to a glossary for example, or to scientific

[Jmol-users] R: Re: R: Re: R: Re: JSmol Question

2013-01-25 Thread pino.stricc...@libero.it
It is nice Jsmol and since u can use the command of Jmol it is ok. The only trouble i have is that i cant put it at the moment in Wordpress (and i figure out Joomla). I tried one time and was not working. I cant say why since i am not into programming. If embed in wordpress it would really a

Re: [Jmol-users] help - Question about JSmol

2013-01-25 Thread Robert Hanson
What happens when you 1) just download http://chemapps.stolaf.edu/jmol//jsmol.zip, unzip it, and run jsmol.htm there on your machine. It works, right? With a menu? 2) now upload that directory to a website and try it there. Works or not? I would think so. 3) now adapt jsmol.htm to your needs or

Re: [Jmol-users] JSmol | Quirky Behavior of Zoom Command

2013-01-25 Thread Robert Hanson
I'm certainly not seeing that. Are you using the latest at http://chemapps.stolaf.edu/jmol/jsmol.zip ? On Fri, Jan 25, 2013 at 10:06 PM, Michael Evans evan...@illinois.eduwrote: Hey all! In JSmol, running the zoom command results in the failure of all subsequent script commands. Apologies if

Re: [Jmol-users] Jmol iPad app

2013-01-25 Thread Philip Bays
I agree with Otis that whatever is done should be compatible across platforms, not just on the iPad. I don't know if any of you have looked at iSpartan which WaveFunction is now marketing. I have only seen it in the display booth at ACS meetings. I think Alan Shusterman from Reed College has

Re: [Jmol-users] JSmol | Quirky Behavior of Zoom Command

2013-01-25 Thread Michael Evans
I am...I should be a little more specific. I had a zoom command in the script parameter of the Info object, and that caused the behavior. Removing the command fixed the problem, so I know zoom is to blame. Could be something with the Info.script object, though. On Friday, January 25, 2013, Robert

Re: [Jmol-users] JSmol | Quirky Behavior of Zoom Command

2013-01-25 Thread Robert Hanson
I guess I will need to see that script. The following works for me: script: set antialiasDisplay;background white;load caffeine.mol;zoom 50;background blue although the following does not properly wait: script: set antialiasDisplay;background white;load caffeine.mol;zoomTo 2 50;background blue

Re: [Jmol-users] JSmol | Quirky Behavior of Zoom Command

2013-01-25 Thread Robert Hanson
(the zoomTo problem is fixed) On Sat, Jan 26, 2013 at 8:55 AM, Robert Hanson hans...@stolaf.edu wrote: I guess I will need to see that script. The following works for me: script: set antialiasDisplay;background white;load caffeine.mol;zoom 50;background blue although the following does