[Jmol-users] JSmol and JSpecView

2013-02-07 Thread Jennifer Muzyka
I apologize if this question has already been covered. I can't figure out how to search the archives of the mailing list. I'm contemplating changing my pages from Jmol to JSmol and wonder if JSmol will display jcamp spectra without any Java intervention. Our IT folks tell me that Java is stil

[Jmol-users] Signed applet, LoadInline and ajax/db

2013-02-07 Thread Quentin Delettre
Dear jmol user list, I have a problem. In my project, i retrieve molecule in sdf from my database via ajax calls + php. The molecule data is returned as json. I am doing this because i want to load the molecules only if they are in the browser view, like lazy loading. Ajax calls are made, no p

Re: [Jmol-users] Signed applet, LoadInline and ajax/db

2013-02-07 Thread Otis Rothenberger
Quentin, I'm not fully following your use of pipes, but I think one error is the following: sdf=sdf.replace(/\|/g,"\n|"); I think you need //n not just /n. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Feb 7, 2013, at 11:31 AM, Quentin Delettre wrote: > Dear jmol us

Re: [Jmol-users] Signed applet, LoadInline and ajax/db

2013-02-07 Thread Paul Pillot
You can prevent eval() in your code with : document[applet_name].Loadinline(sdf) Paul Le 7 févr. 2013 à 17:42, Otis Rothenberger a écrit : > Quentin, > > I'm not fully following your use of pipes, but I think one error is the > following: > > sdf=sdf.replace(/\|/g,"\n|"); > > I think you nee

Re: [Jmol-users] JSmol and JSpecView

2013-02-07 Thread Angel Herráez
Hi Jennifer http://sourceforge.net/mailarchive/forum.php?forum_name=jmol-users is the official archive, but I agree there is no apparent way of searching through it There are several mirrors, e.g. I regularly use http://www.mail-archive.com/jmol-users@lists.sourceforge.net/maillist. html that ha

[Jmol-users] paper on Jmol and orbitals

2013-02-07 Thread Angel Herráez
Dear Jmolers, You may be interested on reading this -- it is offered for free by ACS Interactive Web-Based Pointillist Visualization of Hydrogenic Orbitals Using Jmol Shane P. Tully, Thomas M. Stitt, Robert D. Caldwell, Brian J. Hardock, Robert M. Hanson, and Przemyslaw Maslak J. Chemical Educati

Re: [Jmol-users] Signed applet, LoadInline and ajax/db

2013-02-07 Thread Otis Rothenberger
Hi Paul and Quentin, I think the real problem is sdf=sdf.replace(/\|/g,"\n|"); The above regular expression is replacing | with n|. To replace | with the \n|, the expression needs to be: sdf=sdf.replace(/\|/g,"\\n|"); Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Feb

[Jmol-users] SePublica Semantic Publishing Workshop@ESWC

2013-02-07 Thread Alexander Garcia Castro
SePublica Semantic Publishing Workshop@ESWC (Montpellier 26-30 May); deadline 4 March Call for Participation: Sepublica 2013 -an ESWC Workshop Machine-comprehensible Documents: Bridging the Gap between Publications and Data. ** May 26-30, 2013, Montpelier, France. Workshop Web site: http://sepu

[Jmol-users] JSmol Touch Screen

2013-02-07 Thread Otis Rothenberger
I have our JSmol model kit set with a code branch for iPad and touch screen computers. I can test this on my iPad, but I don't have access to a touch screen computer. Consequently, I don't know if the code branch works or if the touch move models approach works on a touch screen computer at all.