Re: [Jmol-users] Removing the header info

2013-03-29 Thread Robert Hanson
* The command MO titleFormat may be used to show no title. * On Thu, Mar 28, 2013 at 5:41 PM, Roberto Olivares-Amaya roboliva...@gmail.com wrote: Hello, I am currently using jmol to plot some mo's from molden files. When I plot the mo's, there is some information that shows up on the

Re: [Jmol-users] JSmol upload

2013-03-29 Thread Daniel Barich
I still can't open this link in Windows Explorer either. It says the file is invalid. On Thu, Mar 28, 2013 at 2:59 PM, Oliver Stueker revilo2...@users.sourceforge.net wrote: Hi, The jsmol.zip that I have just downloaded seems to be broken: $ unzip jsmol.zip Archive: jsmol.zip

[Jmol-users] Count of groups?

2013-03-29 Thread Eric Martz
I have been enjoying jmolEvaluate, e.g. jmolEvaluate({mse.ca}.count) to get the number of selenomethionines in the model. What is a general method to get the number of groups/copies of a group (e.g. ligand molecule)? Not the number of atoms, but the number of groups? For example, 4b14 has 3

Re: [Jmol-users] Count of groups?

2013-03-29 Thread Alexander Rose
Hi, A while ago I came up with this: print {nhw}.groupindex.all.count().length It is also very fast. Much faster then using a for loop in Jmolscript. Best Alex Am 29.03.2013 um 18:39 schrieb Eric Martz: I have been enjoying jmolEvaluate, e.g. jmolEvaluate({mse.ca}.count) to get the

Re: [Jmol-users] JSmol upload

2013-03-29 Thread Bob Hanson
Traveling but will upload later today. Sent from my stupid iPhone On Mar 29, 2013, at 10:34 AM, Charles Harrison Shubert cshub...@mit.edu wrote: I'm having the same experience. --Chuck On Mar 29, 2013, at 10:14 AM, Daniel Barich wrote: I still can't open this link in Windows

Re: [Jmol-users] JSmol upload

2013-03-29 Thread Robert Hanson
OK, that should be working now. http://chemapps.stolaf.edu/jmol/jsmol.zip ___JmolDate=$Date: 2013-03-24 20:44:26 -0500 (Sun, 24 Mar 2013) $ ___fullJmolProperties=src/org/jmol/viewer/Jmol.properties ___JmolVersion=13.1.14_dev24b On Fri, Mar 29, 2013 at 5:19 PM, Bob Hanson hans...@stolaf.edu

Re: [Jmol-users] light and speedy

2013-03-29 Thread Robert Hanson
It would be nice to have a CIF reader; createRadialGradient() is great. I'll look into that. If you would like to help, Simon, feel free to adapt JSmolTM.js to incorporate some of this. Bob On Fri, Mar 29, 2013 at 10:52 AM, s...@publcif.co.uk wrote: Just found this while looking for the

Re: [Jmol-users] light and speedy

2013-03-29 Thread Robert Hanson
The original question was related to jsmol - does jsmol add some properties to the javascript array object? Yes it does. Most importantly, it implements several types in ALL browsers: Float64Array and Int32Array Clazz.extendedObjectMethods = [ equals, hashCode, getClass,