Re: [Jmol-users] select WITHIN(...)

2013-05-24 Thread Robert Hanson
On Fri, May 24, 2013 at 9:54 AM, Angel Herráez angel.herr...@uah.es wrote: Hello Pshemak Finally, can the selected groups of atom (ions) be given a name (ID) so they could be referred to without repeating the selection criteria? Yes, two ways: using the define command or using a

Re: [Jmol-users] select WITHIN(...)

2013-05-24 Thread Pshemak Maslak
On 5/24/2013 10:49 AM, Robert Hanson wrote: On Fri, May 24, 2013 at 9:54 AM, Angel Herráez angel.herr...@uah.es mailto:angel.herr...@uah.es wrote: Hello Pshemak Finally, can the selected groups of atom (ions) be given a name (ID) so they could be referred to without

[Jmol-users] Embed jmol export to outputstream

2013-05-24 Thread Roshan Punnoose
Hi, I want to use Jmol internally to read a mol file string and retrieve the image created as bytes. Is this possible? Roshan -- Try New Relic Now We'll Send You this Cool Shirt New Relic is the only SaaS-based

Re: [Jmol-users] Embed jmol export to outputstream

2013-05-24 Thread Robert Hanson
Yes, but you can't just output raw bytes to system out. Best way, if it will work for you, is to write them to a temporary file and then read that. If you had a separate Java program that was using Jmol as a library, then you could call methods in Jmol that would deliver the raw image bytes. Note