[Jmol-users] ModelKit broken in 14.0.10

2014-02-20 Thread Ron Mignery
My issue with newly immutable strings in 14.0.9 seems resolved but 14.0.10 ModelKit crashes. -- Managing the Performance of Cloud-Based Applications Take advantage of what the Cloud has to offer - Avoid Common Pitfalls.

Re: [Jmol-users] ModelKit broken in 14.0.10

2014-02-20 Thread Otis Rothenberger
Ron, I may not have played with it enough yet, but I don't see it crashing here: http://chemistry.illinoisstate.edu/osrothen/JSmolVMK2.htm Native model kit menu and our model kit script control menu seem ok on Mac Safari and Chrome. I can't check Windows right now. Otis -- Otis Rothenberger

[Jmol-users] Throw, with a catch -- and a twist!

2014-02-20 Thread Robert Hanson
OK, OK. I just had to say that. For those intrepid souls who enjoy programming, here's a twist on the old try/throw/catch idea. Not released yet, but it's been a good day's work putting it together, and it seems to be working flawlessly. And, by the way, the little bit of code that was necessary

Re: [Jmol-users] ModelKit broken in 14.0.10

2014-02-20 Thread Robert Hanson
Still that problem, Ron? I'm certainly not seeing that. Crash in what sense? Java or HTML5? Like with a Java error report? On Thu, Feb 20, 2014 at 6:45 AM, Ron Mignery remign...@gmail.com wrote: My issue with newly immutable strings in 14.0.9 seems resolved but 14.0.10 ModelKit crashes.

[Jmol-users] ModelKit/Java broken

2014-02-20 Thread Robert Hanson
I see model kit with Java is broken; HTML5 is fine. -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs,

Re: [Jmol-users] ModelKit broken in 14.0.10

2014-02-20 Thread Robert Hanson
http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.11_2014.02.20a.zip fixes the ModelKit failure in Java. Thanks, Ron, for spotting that so fast. On Thu, Feb 20, 2014 at 2:17 PM, Robert Hanson hans...@stolaf.edu wrote: Still that problem, Ron? I'm certainly not seeing that. Crash in what sense?

[Jmol-users] multiple molecules in Jmol window

2014-02-20 Thread Jeffrey Cohlberg
I just gave my students an assignment in which they worked with the files 1PGB (immunoglobulin-binding domain) and 2LYZ (lysozyme). About a third of the class, upon loading either 1pgb.pdb.gz or pdb1pgb.ent, saw six copies of the molecule on their screen instead of one. About half of those

Re: [Jmol-users] multiple molecules in Jmol window

2014-02-20 Thread Robert Hanson
Yes, that's the unit cell. Maybe a lesson there. But mostly an unfortunate distraction for you and your students. Very sorry. This is an issue with set defaultlattice that I thought I had worked out. I have worked on that recently. Jmol was writing set DefaultLattice {0 0 0} in states, and