Re: [Jmol-users] inactive mouse with WebGL

2014-09-08 Thread Robert Hanson
it is working at the top link (mine) just not your two. So something is wrong with that installation. So 14.2.4 and 14.3.5 perhaps are too old; try updating. On Wed, Sep 3, 2014 at 2:21 AM, Jaime Prilusky < jaime.prilu...@weizmann.ac.il> wrote: > Can you please verify if mouse interaction is bro

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

2014-09-08 Thread Robert Hanson
rebooting on this issue after fixing a possibly related problem -- http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.08b.zip Jmol.___JmolVersion="14.3.7_2014.09.08" bug fix: binary document reader can skip bytes if an http connection fails to deliver the full set of requested bytes

Re: [Jmol-users] The world of Jmol - an update: crystallography

2014-09-08 Thread sw
Thanks Bob - I'll certainly change the description. Cheers Simon PS - I think I used Jmol defaults in generating the gifs - I'll check... Quoting Robert Hanson : > Fantastic, Simon. This will go a long way to informing people. I would like > to suggest some more explicit explanation in: > > >

Re: [Jmol-users] jmol-14.3.7_2014.09.07c

2014-09-08 Thread Jaime Prilusky
Great!. Now the version appears correct. Mouse interacts with WebGL rendering. spin on applet while on WebGL appears broken. More testing later. Jaim On Sep 8, 2014, at 3:56 PM, Robert Hanson mailto:hans...@stolaf.edu>> wrote: Oy, that explains A LOT. Looks like since mid August the zip files at

Re: [Jmol-users] jmol-14.3.7_2014.09.07c

2014-09-08 Thread Robert Hanson
Oy, that explains A LOT. Looks like since mid August the zip files at St. Olaf have had updated Jmol.jar versions but not JSmol.zip. My goodness. OK. Make that: http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.08.zip On Sun, Sep 7, 2014 at 10:52 PM, Jaime Prilusky < jaime.prilu...@weizmann

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

2014-09-08 Thread Robert Hanson
third read, different again On Mon, Sep 8, 2014 at 7:40 AM, Robert Hanson wrote: > yes. First one -- first load, garbage, second load maybe OK, but probably > partially garbage. Not sure about that flat "surface" > > On Mon, Sep 8, 2014 at 7:31 AM, wrote: > >> A couple of (perhaps not very use

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

2014-09-08 Thread chris.wood
A couple of (perhaps not very useful) answers: - it is only a single machine - the file is a static file that I uploaded - it's not being calculated on the fly I've just uploaded another 2 mrc files to the server - do you get the same problems with these? http://www.ccpem.ac.uk/jsmol_test/dat

Re: [Jmol-users] The world of Jmol - an update: crystallography

2014-09-08 Thread Robert Hanson
Fantastic, Simon. This will go a long way to informing people. I would like to suggest some more explicit explanation in: *The animations reflect the relationships between the various phases that constitute the final structure, rather than a realistic disposition of atoms in 'time and space', i.

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

2014-09-08 Thread Robert Hanson
OK, here's a twist: When I download the file and then read it from disk, it reads perfectly. When I load it as " http://www.ccpem.ac.uk/jsmol_test/data/1akeA_10A.mrc"; Jmol reads trash. Actually, the problem is intermittent. One time I read the following (blocks of 8 bytes, shown starting at byte

Re: [Jmol-users] The world of Jmol - an update: crystallography

2014-09-08 Thread sw
For anyone interested in modulated structures and especially Jmol's visulaization - see http://publcif.iucr.org/cifmoldb/mscif/ Not a fully 'public' page yet - will probably add some of Bob's links... Quoting Robert Hanson : > [Sorry for the blog-like nature of this message. I'm not ready to