It is certainly in Japanese for me using
java -Duser.language=ja -jar jmol.jar
On Thu, Jan 22, 2015 at 8:46 PM, Kudou Takahiro
wrote:
> Thank you for your comment and advice.
>
> 1) Issue that Java is not launched
> I could launch Java by clicking the "activate Java" link.
>
> 2)
> I tried
Jmol.___JmolVersion="14.2.12_2015.01.22" released simultaneously with
14.3.12
new feature: load =cod/141 loads Crystallographic Open Database CIF
files
bug fix: color rockets amino fails
bug fix: "color TRANSLUCENT -1" (screened translucency) restored; -- had
been removed in 14.3.12_2015.01.2
Thank you for your comment and advice.
1) Issue that Java is not launched
I could launch Java by clicking the "activate Java" link.
2)
I tried again with the newer version of Jmol (14.2.11).
I think it still have some problem in Mac 10.6.
The results are described below:
[Stand alone]
Eric, this one is for you!
http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.12_2015.01.22.zip
Jmol.___JmolVersion="14.3.12_2015.01.22"
*bug fix: color rockets amino failsbug fix: "color TRANSLUCENT -1"
(screened translucency) restored; * -- had been removed in
14.3.12_2015.01.20 because broken
http://www.identifont.com/find?similar=helvetica+neue&q=Go
http://www.identifont.com/find?similar=Avenir&q=Go
What do others think?
On Thu, Jan 22, 2015 at 3:07 PM, Robert Hanson wrote:
> I have already released this as Helvetica Neue. OK?
>
> On Thu, Jan 22, 2015 at 6:29 AM, David Leader
> wr
Margaret, I have found a way around unwanted forcing of chain case. Now it
only does this when there really is a file with such case or when you
specifically use quotation marks:
select :"a"
Once a file is cleared from memory (ZAP or LOAD command), then we are back
to whatever SET chainCaseSensit
I spent the day bringing translucent -1 back, and I have to say I really
like it. Especially with antialiasing. :)
Bob
On Wed, Jan 21, 2015 at 9:40 PM, Robert Hanson wrote:
> Well, Eric, I do apologize. I swear I looked at the code and saw that it
> was broken and had been since 2009, so I figu
Margaret, Happy New Year!
I'm not surprised. I plugged some holes that were in this notation. Angel
is right. What you were using there was an undocumented "feature" that is
not any longer.
Along with things like
select * * *
You might also want to note that you can accidentally slip into
case-s
I have already released this as Helvetica Neue. OK?
On Thu, Jan 22, 2015 at 6:29 AM, David Leader
wrote:
> Bob replied to my description of the Safari 7 font-rendering problem on
> JSmol:
>
> ==
> Certainly very curious. It must be consider
Hi Margaret
Your syntax is not right
See
http://chemapps.stolaf.edu/jmol/docs/#atomexpressionsrasmolbiomolecularresiduespecificati
ons
If you want to select chain A, you need
select *:A
the colon there is essential to identify chain; this may also work but it's
less clear:
select :A
or, if y
Using Jmol 14.2.11 and 1qqw.pdb, when enter 'select *a", 0 atoms are selected.
Tested with 14.0.4 - and all atoms are selected.
Tested on multiple computers, with same results.
Suggestions?
Margaret Franzen, Ph.D.
Program Director
Center for BioMolecular Modeling
Tel: (414) 277-2806
Fax: (414) 2
Bob replied to my description of the Safari 7 font-rendering problem on JSmol:
==
Certainly very curious. It must be considered a Safari bug that they are
not picking up the sans-serif bold, which is required by HTML5 standards.
But we can ge
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