Re: [Jmol-users] Jmol Application Gaussian export/tool

2015-06-09 Thread Robert Hanson
yes, very simple. See http://chemapps.stolaf.edu/jmol/zip/Jmol.jar On Tue, Jun 9, 2015 at 5:41 PM, Kubasik, Matt wrote: > Dear Bob, > > Sometime between 14.1.14 and 14.2.14, the application's Gaussian export > tool broke. I think the break may correspond with moving the writing of > Gaussian

Re: [Jmol-users] echo image questions

2015-06-09 Thread Robert Hanson
It's fixed. Thanks for pointing this out, Frieda. See http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.14_2015.06.10.zip Jmol.___JmolVersion="14.3.14_2015.06.10" bug fix: animation buttons go to wrong first frame for FRAME [3 2 1] bug fix: JSmol set echo IMAGE not working properly (Frieda Reichsm

Re: [Jmol-users] using timeout while a file is retrieved

2015-06-09 Thread Robert Hanson
Try load ASYNC "x" It will cause the load command to run twice -- first to start the loading and then to conclude the loading. This uses an asynchronous channel. I tried it just now with n = 0; ... xxn = setInterval(function() {document.title = "testing " + (n++);},1) and it fired up

[Jmol-users] Jmol Application Gaussian export/tool

2015-06-09 Thread Kubasik, Matt
Dear Bob, Sometime between 14.1.14 and 14.2.14, the application's Gaussian export tool broke. I think the break may correspond with moving the writing of Gaussian input files from File>Export>Guassian... to Tools>Gaussian. The newer version of the Jmol app fails to enter the element symbol on

Re: [Jmol-users] echo image questions

2015-06-09 Thread Frieda Reichsman
Oh - I see now that you said that the applet worked with depth 0, not JSmol/HTML5. Sorry for the confusion; I have now confirmed your confirmation that “set echo depth 0" does not address the black background problem in JSmol. ;-) > On Jun 9, 2015, at 2:21 PM, Frieda Reichsman wrote: > > An

Re: [Jmol-users] echo image questions

2015-06-09 Thread Frieda Reichsman
Angel, thanks for your response! And for confirming these reports. I hope you are well. Unfortunately, the trick you suggest below (setting the echo depth to zero) does not clear the black background for me - not sure why it would work in one circumstance (yours :) and not another. > On Jun

Re: [Jmol-users] using timeout while a file is retrieved

2015-06-09 Thread Otis Rothenberger
Angel, Some visual assurance that the user is not hung is a really good idea. Combining Jmol script with JavaScript is something I often use. It’s just easier for me. I even define a few Jmol script globals on Jmol load so that I can fill them with JavaScript using Jmol.script(jmolApplet0, scpt

Re: [Jmol-users] using timeout while a file is retrieved

2015-06-09 Thread Angel Herráez
Thanks Otis it's basically your #2 I was just playing once again with my old idea od giving the user a hint of "please wait" and also "things are progressing". Today I had a file that takes time to load so the idea came back. My current, regular solution is a Jmol echo "loading..." but when

Re: [Jmol-users] using timeout while a file is retrieved

2015-06-09 Thread Otis Rothenberger
Angel, I think the only way you’re going to be able to do this is asynchronously, but load ASYNC appears to be broken on the version I’m using - 14.2.4 about a year old. I’m curious about the specifics of your plan. What are you trying to do? 1) Play with the existing model during new loading.

[Jmol-users] using timeout while a file is retrieved

2015-06-09 Thread Angel Herráez
Hi all, I'm trying to use the "timeout" command to do something repeatedly until a file is retrieved and loaded into JSmol. The doc says the timeout will stop when zap or load are used, so I was expecting this to suit my needs. I have managed to set a timeout that works, in the form timeout