Re: [Jmol-users] << Extracting a frame from MOPAC DRC calculation >>

2009-10-19 Thread Hatuey
Thank you! []'s, Hatuey Charles de Gaulle<http://www.brainyquote.com/quotes/authors/c/charles_de_gaulle.html> - "The better I get to know men, the more I find myself loving dogs." On Mon, Oct 19, 2009 at 3:47 PM, Robert Hanson wrote: > select 1.3 > write &q

[Jmol-users] << Extracting a frame from MOPAC DRC calculation >>

2009-10-19 Thread Hatuey
Hello All, I would like to know how to extract a "frame" from a DRC calculation in MOPAC. I got a XYZ file with all the calculation steps that are easily show in Jmol as an animation, but I want to get a file (mol, mol2, PDB) for a given step. Best regards, Hatuey ___ Marie

Re: [Jmol-users] << Making Contour Plot with JMol

2009-02-19 Thread Hatuey
Thank you. Any idea about other programs that could do that for Gaussian cube files? []s, Hatuey ___ Bill Watterson - "There is not enough time to do all the nothing we want to do." On Thu, Feb 19, 2009 at 4:48 PM, Robert Hanson wrote: > That requires a very different approach

[Jmol-users] << Making Contour Plot with JMol

2009-02-19 Thread Hatuey
Hi all, I already know how to make contour plots of surfaces in different planes. I want to do contour plots but only with lines, not with gradient colors. Also, I would like to add some legend about the value of each density line. Regards, Hatuey ___ Katharine Hepburn - "Life is hard.

[Jmol-users] << Plotting MEP from GAMESS >>

2008-06-03 Thread Hatuey
quot;No partial charges were read from the file...". Questions: 1-) How to setup GAMESS in order to let JMol plot the MEP? 2-) Is there a way to create a file similar that obtained with MOPAC2007 (using GRAPHF keyword) with all the information about MO, MEP, etc? My JMol version is 11.5.

Re: [Jmol-users] << Plotting Gaussian results >>

2008-04-10 Thread Hatuey
Bob, Here is the file. This is a test file to see how do JMol plot the MO. My real file has 9MB. Thanks in advance, Hatuey On Wed, Apr 9, 2008 at 3:31 PM, Bob Hanson <[EMAIL PROTECTED]> wrote: > please send me that file. > > Hatuey wrote: > > > Dear Bob, > >

Re: [Jmol-users] << Plotting Gaussian results >>

2008-04-09 Thread Hatuey
Dear Bob, thanks. Now I can plot any MO, but using mo n When I use mo homo, nothing happens and the commands send in the script window do not work any more. Regards, Hatuey On Tue, Apr 8, 2008 at 11:59 PM, Bob Hanson <[EMAIL PROTECTED]> wrote: > also -- then you would use the M

[Jmol-users] << Plotting Gaussian results >>

2008-04-08 Thread Hatuey
a problem of the generated cube file or a JMol problem? Regards, Hatuey - This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Register now and save $200. Hurry, offer ends at 11:59 p.m., Monday, April 7! Use

Re: [Jmol-users] Jmol on 64 bit machine

2007-09-22 Thread Hatuey
, Gamess-US, and of course, Jmol without a problem. The only thing BAD is that as I have the source of NWChem and Gamess-US, I can compile them to run in 64bits and get the full advantages of 64bit computing, so the calculations can run at almost twice the speed for 32bits. Regards, Hatuey On 9/21/07

Re: [Jmol-users] Jmol on 64 bit machine

2007-09-21 Thread Hatuey
box :( everthing work fine! Regards, Hatuey On 9/21/07, Helix Photon <[EMAIL PROTECTED]> wrote: > > Hi Egon, > I am using Ubuntu 7.04 for 64 bit machines and I am using Firefox version > 2.0.0.6 as the web browser. > regarding the plugin, when I tried to install it showed

Re: [Jmol-users] Are there any files available displaying simple geometric solids

2007-09-07 Thread Hatuey
Dean, It is your site available for off-line viewing? I found very useful for teaching. []s, Camps On 9/7/07, Dean Johnston <[EMAIL PROTECTED]> wrote: > It's not a repository, but I do have a few of the structures you mention > (cube, octahedron, dodecahedron, icosahedron) on my site > > http:/

Re: [Jmol-users] << Plotting electrostatic potential scale >>

2007-08-29 Thread Hatuey
, Hatuey On 8/28/07, Angel Herraez <[EMAIL PROTECTED]> wrote: > Hello > I'm not answering how to get the surface rendered and colored, just the > colored bar idea. > You could do something by loading into Jmol a fake model which has > several vertically aligned atoms and co

Re: [Jmol-users] << Plotting electrostatic potential scale >>

2007-08-24 Thread Hatuey
On 8/24/07, Bob Hanson <[EMAIL PROTECTED]> wrote: > what is an electrostatic potential surface, then? > The electrostatic potential in a given surface. Hatuey - This SF.net email is sponsored by: Splunk Inc. St

Re: [Jmol-users] << Plotting electrostatic potential scale >>

2007-08-23 Thread Hatuey
Frieda, Thanks by your answer. To plot the electron density I did the following: As I use Jaguar, I set it up to export the electron density as a PLT file. Then I loaded into Jmol. Regards, Hatuey On 8/23/07, Frieda Reichsman <[EMAIL PROTECTED]> wrote: > > > On Aug 23, 2

Re: [Jmol-users] << Plotting electrostatic potential scale >>

2007-08-23 Thread Hatuey
density) and mapping it to the electrostatic potential. Regards, Hatuey On 8/22/07, Bob Hanson <[EMAIL PROTECTED]> wrote: > Hatuey wrote: > > >Hi all, > > > >I would like to know if it is possible to put a color scale together > >with an electrostat

[Jmol-users] << Plotting electrostatic potential scale >>

2007-08-22 Thread Hatuey
Hi all, I would like to know if it is possible to put a color scale together with an electrostatic potential surface. Regards, Hatuey - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to