Re: [Jmol-users] Displaying ligand environments

Good to know Bob. I must check them out. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2014/1/10 Robert Hanson > There are some new syntaxes that also make this particular task very easy. > > By the way, see the RCSB beta site, which has a new "Li

Re: [Jmol-users] Displaying ligand environments

Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2014/1/9 Glen van Ginkel > Hi all, > > After loading a PDB file I'm trying to restrict the view to the > environment (surrounding residues) of a specific ligand. I'm able to > select atoms within a given

Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux

n your site if you want to use Java (defaults to ./java) 5) try your page and see how it goes. You may still have some problems, because not all of the methods in the original Jmol.js are included here. Let me know if that's the case. ---- Pozdrawiam, | Best regards, Maciek Wójcikowski ma

Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux

Both Java and JavaScript are computed on client side. The huge difference is that, as you mentioned, there's no need for Oracle Java plugin any more - every bit of JavaScript runs in the browser. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2013/9/24 Gro

Re: [Jmol-users] JSmol too slow!

l, but it's far better than it was 3 months ago. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2013/9/9 Robert Hanson > > > > On Sun, Sep 8, 2013 at 5:36 PM, Amjad Farooq wrote: > >> What is the long-term goal? Is JSmol eventually goin

Re: [Jmol-users] proposed restyling of JSmol pop-up menu

Hi, Those changes seam grate! It will probably resolve some issues I had when combining JSmol with Bootstrap. I'd also add some kind of caret on the menus, that expand. It should make interacting with it much easier. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikows

[Jmol-users] DiSCuS [pre-release] - Database System for Compound Selection

te me an email or comment on G+. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your s

Re: [Jmol-users] Calculating H-bonds between models

rames/models? ---- Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2012/6/18 Angel Herráez > Hello Maciek > > I am not certain, but I think that you probably cannot get Jmol > looking for bonds between models. After all, atoms and bonds belong > to a

[Jmol-users] Calculating H-bonds between models

are detected. I also tried to loosen angle and distance criteria, but it only led to some really weird internal hbonds. Any ideas on that? Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl -- Live S