at 2:41 PM, Nikolay Bogdanov
nikol.bogda...@gmail.com mailto:nikol.bogda...@gmail.com wrote:
It is unable to select atoms using mouse, and there is no hint
with atom ID and number when cursor hangs at atom. Rotation
with left click, and right click menu work. Same
. Is this app or applet? What script commands are you
giving Jmol to request select atoms with the mouse?
On Tue, Sep 11, 2012 at 2:41 PM, Nikolay Bogdanov
nikol.bogda...@gmail.com mailto:nikol.bogda...@gmail.com wrote:
It is unable to select atoms using mouse, and there is no hint
It is unable to select atoms using mouse, and there is no hint with atom ID
and number when cursor hangs at atom. Rotation with left click, and right
click menu work. Same on both mac os and linux.
2012/9/11 Robert Hanson hans...@stolaf.edu
details?
On Tue, Sep 11, 2012 at 11:36 AM, Nikolay
I'm trying to make a figure showing the coordination of metal ions in crystal -
they form network of tetrahedra. I can do this with bonds, but the
figure looks confusing. It would be much more clear with opaque tetrahedrons.
As I understand Jmol builds polyhedra around some central atoms, which
to invert the atom
positions, use the INVERTSELECTED command.
On Mon, Mar 19, 2012 at 10:18 AM, Nikolay Bogdanov
nikol.bogda...@gmail.com mailto:nikol.bogda...@gmail.com wrote:
But they are not identical:
Point (1.0, 1.0, 1.0) goes into (0.0016, 0., -1.7320) with my
left-handed
Hi,
I try to find out how to apply a rotation matrix to the model with jmol. I have
a matrix to be applied to coordinates this way:
matrix [[a1,b1,c1],[a2,b2,c2],[a3,b3,c3]]
xnew=a1*x+b1*y+c1*z, ynew=a2*x+b2*y+c2*z etc
It looks like I need just to do $ rotate selected @matrix. But it works for
]
[0.3031219-0.38339567-0.8724247] ]
to be identical rotations.
On Mon, Mar 19, 2012 at 6:02 AM, Nikolay Bogdanov
nikol.bogda...@gmail.com mailto:nikol.bogda...@gmail.com wrote:
Hi,
I try to find out how to apply a rotation matrix to the model with
jmol. I have
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