Re: [Jmol-users] surface representations of atom selections

At 2010-06-01 09:24, you wrote: >From: Robert Hanson >Subject: Re: [Jmol-users] surface representations of atom selections > >Check the documentation regarding the isosurface command and the >options SELECT and IGNORE. Some combination of those two will do >exactly what you want. If you use SASU

[Jmol-users] surface representations of atom selections

Hello, I'm trying to show the "shrink-wrapped" surface of a ligand in Jmol -- but it appears that "isosurface" will simply render the portion of the complete (i.e. all loaded models) solvent-accessible surface. For a partially buried ligand, this breaks the surface noticeably. "geoSurface" s

[Jmol-users] slab/depth, zoom based on angstroms

Hello, Just wondering if there's an easy way to change slab (or equivalently, depth) based on an absolute amount (e.g. A or nm) rather than a relative percentage of boundbox (which I what I think it's based upon based on the docs). Alternatively, if this is not possible, is there a simple met