*../* or *../../*
according to the directory path.
5. If step 4 fails, try to include* full path* of the file (or) URL.
6. If above all step fails, simply *view the raw file* in the browser using
the URL to confirm the file access.
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumarac
t; ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
T. Ashok Kumar
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil
"");
var result = Jmol.evaluateVar(jmolApplet0, query);
if (result > 0) {
document.getElementById('Output').innerHTML = "Both SMILES are
same.<br/>Score: " + result;
} else {
document.getElementById('Output').innerHTML = "Both SMILES are differe
Hi Angel Herráez,
Thank you... Got the solution.
data "*model* docking"
:
:
:
:
end "model docking";
show data;
But, it seems the word "model " is compulsory.
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
K
Is it possible to combine Jmol script and PDB file into a single file and
load it into JSmol?
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil, Thuckalay - 629 180
Kanyakumari District, INDIA
Mobile:- 00 91 9655307178
*E-Mail
I am developing an online molecular modeling and drug design web server,
which will publicly available after completion of design. I use JSmol for
molecular visualization, ligand interaction, and some other computation
part. I am not much familiar with most of the .jar files in the Jmol. If
you sug
Dear Otis,
Thank you for your support...
My next goal is to compare the query SMILES string with the canonical
SMILES strings present in the MySQL database using Ajax.
Thank you Jmol group members.
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
NC(=O)C3=N2)CC(C(C(CO)O)O)O',
'N(C(NC1=O)=O)=C(C1=NC2C=C3C)N(C=2C=C3C)C[C@H]([C@@H](O)[C@H](CO)O)O');
}
Now it works fine.
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil, Thuckalay - 629 180
Kanyakumari District, INDIA
e(jmolApplet0, query);
}
function Match()
{
document.getElementById('Output').innerHTML = CompSmi();
}
Output: 47
I thank all Jmol group members for your kind support
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil, Thuc
in JSmol. The link for trial webpage is ..
http://www.biogem.org/uploads/Jmol_SMILES.html.txt
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil, Thuckalay - 629 180
Kanyakumari District, INDIA
Mobile:- 00 91 9655307178
*E-Mail
/uploads/JSmol_Console.png
I am confused whether using *Jmol.evaluateVar() *function is only choice
(or) the declaration is wrong.
--
*T. Ashok Kumar*
Head, Department of Bioinformatics
Noorul Islam College of Arts and Science
Kumaracoil, Thuckalay - 629 180
Kanyakumari District, INDIA
Mobile
key, ans) {
key = key.replace(/\\/g, '');
ans = ans.replace(/\\/g, '');
return Jmol.evaluateVar(jmolApplet0, "'" + key + "'.find('SMILES','" +
ans + "') > 0");
}
compSmiles('CC1=CC2=C(C
#x27;console');
})
*Script:*
smiles1 = "C(=C(C(=N1)C)O)(C(=C1)CO)CO";
smiles2 = "CC1=NC=C(C(=C1O)CO)CO";
result = smiles2.find("SMILES", smiles1);
if(result > 0)
{
print "Both SMILES are same.\nScore:" + result;
}
else
{
print "Both SMIL
Dear Bob,
How to run JSmol SMILES matching script in a webpage, like a javascript?
For example,
document.write("O[C@](F)(Cl)I".find("smiles","O[C@](F)(Cl)I"));
(OR)
var x = "O[C@](F)(Cl)I".find("smiles","O[C@](F)(Cl)I");
d
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