Re: [Jmol-users] Is a coloured SolventAccSurf possible?

2007-12-07 Thread Noel O'Boyle
Thanks for all the suggestions... Noel - SF.Net email is sponsored by: Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/se

Re: [Jmol-users] Is a coloured SolventAccSurf possible?

2007-12-07 Thread Bob Hanson
Should be interesting to compare your calculation with Jmol's. There is a built-in property surfaceDistance that handles this. The data statement documentation hasn't been looked at for quite some time. It's a bit out of date. This refers to Jmol 11.3. You have several options: Using your data,

Re: [Jmol-users] Is a coloured SolventAccSurf possible?

2007-12-07 Thread Noel O'Boyle
The answer is Yes - if you read the documentation a second time you would have found the MAP option. Noel On 07/12/2007, Noel O'Boyle <[EMAIL PROTECTED]> wrote: > Dear Jmol team, > > I would like to draw a VdW or Solvent Accessible Surface in the active > site of a protein and colour it based on

[Jmol-users] Is a coloured SolventAccSurf possible?

2007-12-07 Thread Noel O'Boyle
Dear Jmol team, I would like to draw a VdW or Solvent Accessible Surface in the active site of a protein and colour it based on some property of the atoms used to build the surface. Is this possible with Jmol? The most common use case is to colour the surface red for proton donors, and blue for