Jmol users,
http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.02.zip
is now available. This fixes a problem with JSME getting pushed out of the
window in certain blogs, I hope.
See
http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm
and
Bob:
I get an unrecognized file type in the vibrate.htm link
On Jun 16, 2013, at 1:21 PM, Robert Hanson hans...@stolaf.edu wrote:
I've uploaded new files for 13.1.17_dev_2013.06.16:
http://chemapps.stolaf.edu/jmol/jsmol.zip
http://chemapps.stolaf.edu/jmol/Jmol-13.zip
Thanks to Nick
sorry, slipped a space into the middle of the file name.
On Sun, Jun 16, 2013 at 2:00 PM, Bays Philip pb...@saintmarys.edu wrote:
Bob:
I get an unrecognized file type in the vibrate.htm link
On Jun 16, 2013, at 1:21 PM, Robert Hanson hans...@stolaf.edu wrote:
I've uploaded new files
Hi Bob,
Did anyone say they had trouble seeing the 'flexible fit' morph?
For those on Macs...
I wonder if anyone else had issues with the 'flexible fit' morph not showing
smooth transitions using Firefox on the Macrunning OSX 10.8.4? It is Firefox
version 21 that I am trying it with. I have
It works smoothly for me on a MBP using 10.8.4 and both Safari and Firefox.
On Jun 16, 2013, at 8:50 PM, Wayne Decatur wdeca...@yahoo.com wrote:
Hi Bob,
Did anyone say they had trouble seeing the 'flexible fit' morph?
For those on Macs...
I wonder if anyone else had issues with the
Bob,
Not sure if I'm the only one having this problem, but I can't get jsmol.zip
to decompress properly. On OS X 10.8.2, Archive Utility hangs while trying
to unzip it.
I both hope and don't hope it's just me! :-P
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
Mike, I downloaded it like 2 hours ago and it unzipped well
(Windows, WinZip)
--
Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS,
MVC, Windows 8 Apps, JavaScript and much more. Keep your skills
http://chemapps.stolaf.edu/jmol/jsmol.zip
-- echo IMAGE
-- background IMAGE
-- partially compressed .js files
(I think you must load an image from the host machine, not cross-domain.)
I have Google Closure-compiled all the necessary JS*.js files into one
200KB file, JSmol.min.js, which is
I forgot to upload the JAR files. Working now.
On Wed, Nov 28, 2012 at 5:26 PM, Otis Rothenberger osrot...@chemagic.comwrote:
Bob,
OK, now it works, but there's another problem on the page. I believe the
script on the MO DENSITY link might be wrong. While it loads in HTML5
mode, it does
Bob:
In the test2 example, I still am getting an error when trying to load the mo
files. All that is shown is the file neame.
On Nov 27, 2012, at 9:40 PM, Robert Hanson hans...@stolaf.edu wrote:
http://chemapps.stolaf.edu/jmol/jsmol.zip
http://chemapps.stolaf.edu/jmol/jsmol/test2.htm
is not my forte!
All the best
Nick
--
3D Organic Animations http://www.chemtube3d.com
Tel: +44 (0)151-794-3506 (3500 secretary)
Begin forwarded message:
Message: 2
Date: Tue, 27 Nov 2012 20:40:11 -0600
From: Robert Hanson hans...@stolaf.edumailto:hans...@stolaf.edu
Subject: [Jmol-users
Do you think it's your browser?
On Wed, Nov 28, 2012 at 6:26 AM, Philip Bays pb...@saintmarys.edu wrote:
Bob:
In the test2 example, I still am getting an error when trying to load the
mo files. All that is shown is the file neame.
On Nov 27, 2012, at 9:40 PM, Robert Hanson
Subject: [Jmol-users] JSmol update
To: jmol-users@lists.sourceforge.net
jmol-users@lists.sourceforge.net
Message-ID:
CAF_YUvXUu17WdWuTrqkV+Tg4h6n9X63F_h8Paud8RDo=u8_...@mail.gmail.com
Content-Type: text/plain; charset=iso-8859-1
http://chemapps.stolaf.edu/jmol/jsmol.zip
http
Phil,
On Safari 6.0.2, I load the MO files. Are you using Safari?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 12:46 PM, Robert Hanson wrote:
Do you think it's your browser?
On Wed, Nov 28, 2012 at 6:26 AM, Philip Bays pb...@saintmarys.edu
Otis:
I am using Safari, Firefox, and Camino (with which I have never used for JSmol
until just now). I am getting an unrecognized file type error in all of
them. I have not cleared the Safari cache because I do not see how to do it.
It used to be in the Safari drop down menu. I do not
the file that would be causing that error is
http://chemapps.stolaf.edu/jmol/jsmol/JSmolCore.js
or it's a problem with how JSmolCore determines whether your system can
read binary files directly.
Look in that file for
// JSmolCore.js -- Jmol core capability 11/28/2012 1:56:34 PM
at the top
Phil,
In the Preferences/Advanced menu, check Show develop menu in menu bar. There
is an Empty Caches and a Disable Caches selection in the resulting Develop menu
item. In the Safari menu selection there is also a Reset Safari... selection.
They keep changing stuff like this to irritate us!
Phil,
My bad. I missed the MO HOMO SQUARED and MO DENSITY links. They are not loading
with Jmol or HTML5.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 3:01 PM, Otis Rothenberger wrote:
Phil,
In the Preferences/Advanced menu, check Show develop
Bob and Phil,
I think the relevant smol file is missing from this directory:
http://chemapps.stolaf.edu/jmol/jsmol/
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 3:30 PM, Otis Rothenberger wrote:
Phil,
My bad. I missed the MO HOMO SQUARED and MO
Last Saturday we were in the midst of looking at the Firefox error message
showing up in both Firefox Safari. At that time I also mentioned this issue.
In the next iteration of Bob's uploads, the Firefox error was corrected and
the MO's loaded. Bob: whatever you did then needs to be done
yes, of course! Try now. Note that the density one is not the sort of
thing to have on a web site -- this has to calculate the orbitals for ALL
occupied orbitals. You would really do this off line, create the JVXL file,
and then call that up if it were on line.
Bob
On Wed, Nov 28, 2012 at 2:30
Working for me now although the behavior is still different for HTML5 vs.
WebGL. The thread test for WebGL doesn't work right for me in Safari and the
mo links give meshes that I can't see through in WebGL while with HTML5 I can
see through them.
Bob,
OK, now it works, but there's another problem on the page. I believe the script
on the MO DENSITY link might be wrong. While it loads in HTML5 mode, it does
not display the MO in JAVA mode unless I enter:
mo homo DENSITY
The link script that loads the model does not id an MO.
If I'm
http://chemapps.stolaf.edu/jmol/jsmol.zip
http://chemapps.stolaf.edu/jmol/jsmol/test2.htm
The top middle link is a test that demonstrates that JSmol successfully
implements threads -- interrupting a running, looping script to execute a
moveTo command and re-entering the script at the right
Looks like we might be in business with thread-like behavior in JSmol. This
is nontrivial, but
http://chemapps.stolaf.edu/jmol/jsmol/test2.htm
now demonstrates that with it's start-up script, allowing for asynchronous
delays within the script. (The script is suspended until the delay is
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