in what context?
Warren Gallagher wrote:
>27. Sep, 2006
>
>On Sep 27, 2006, at 8:25 PM, Bob Hanson wrote:
>
>
>>thank you. Keep 'em coming.
>>
>>
>>
>
> The "hbonds" command no longer seems to work. It appears you have to
>go all the way back to version 10.0 to get it to work. Is th
Hi Warren
Starting 10.2, you have to use "hbonds claculate" before the first
"hbonds on"
(unless the pdb file provides specification of Hbonds, which is what
"hbonds on" will show without "calculate". Most pdb files don't have
such.
El 27 Sep 2006 a las 23:49, Warren Gallagher escribió:
> 27.
27. Sep, 2006
On Sep 27, 2006, at 8:25 PM, Bob Hanson wrote:
> thank you. Keep 'em coming.
>
The "hbonds" command no longer seems to work. It appears you have to
go all the way back to version 10.0 to get it to work. Is this
command still supported or has it been replaced with somethi
thank you. Keep 'em coming.
-
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I have inserted my responses in red. Hope this
works.
I did my tests with 10.9.64 and 10.9.67 applets. -Eric
On 9/23/06, Bob Hanson wrote:
Synopsis
1) Calcium as protein is fixed in 10.9.61.
I agree that it is fixed!
2) The problem with
situations where there are two groups in the same
Timothy Driscoll wrote:
>On Sep 23, 2006, at 9:59 AM, Bob Hanson wrote:
>
>
>>>Jmol fails to connect some atoms with covalent bonds where there
>>>should be
>>>connections.
>>>
>>>
>>>
>>>
>>This is an intended feature, not a bug. In many PDB/mmCIF files, the
>>author has explicitly defi
On Sep 23, 2006, at 9:59 AM, Bob Hanson wrote:
>
>> Jmol fails to connect some atoms with covalent bonds where there
>> should be
>> connections.
>>
>>
> This is an intended feature, not a bug. In many PDB/mmCIF files, the
> author has explicitly defined quite a number of bond connections using
>
Just a follow up on this, since I haven't heard from Eric, and 11.0 is
just around the corner. This is a lengthy message.
Synopsis
1) Calcium as protein is fixed in 10.9.61.
2) The problem with situations where there are two groups in the same
chain with the same residue sequence numb
Eric, I think I've addressed most of your concerns below.
Bob
Eric Martz wrote:
>I am looking forward to the release of Jmol 11 which already has many
>improvements and bug fixes beneficial for FirstGlance in Jmol.
>
>However, many bugs that I reported months ago have not, as far as I know,
>b
Eric Martz wrote:
>Calcium ions are included in protein.
>
>
>
an easy fix. Thanks.
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thank you, Eric. This is a terrific list. Please be sure to file these
as bug reports so that they can be acted on in a timely fashion. It
would be best if there is one report for each type of bug. Some of these
(deuterium isotopes, for example) should be put in as a feature request,
as Jmol ha
I am looking forward to the release of Jmol 11 which already has many
improvements and bug fixes beneficial for FirstGlance in Jmol.
However, many bugs that I reported months ago have not, as far as I know,
been fixed.
Sometimes Jmol deems certain atoms to be none of protein, nucleic, nor
hete
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