Re: [Jmol-users] PDB and SCOP

2004-10-01 Thread Old Address
Miguel wrote: I developed a small solution for displaying PDB Entries in a comfort way with the applet that is great (With Ball and Stick what you recommended me and a very useful cartoon visualisation). I must say that the v10 beta works really great... I am glad that it was useful. Apart

Re: [Jmol-users] PDB and SCOP

2004-10-01 Thread Ujjwal Das
We do show SCOP domains on PDB chain/chains. Please have a look at http://www.ebi.ac.uk/interpro/ISpy?ac=P02699&mode=single We have a set of pre-calculated attribute files for Astex viewer to highlight the domain. Astex viewer considers each observed residue as an object. So we have to pre-calcu

Re: [Jmol-users] PDB and SCOP

2004-09-30 Thread Jaime Prilusky
According to Miguel: > If the data is not in the input file then Jmol probably cannot do > anything. (Unless the algorithms are published and the techniques are > generally agreed-upon) As I understand, the SCOP classification is been constructed manually, so no automatic procedure is available.

Re: [Jmol-users] PDB and SCOP

2004-09-30 Thread Miguel
> I developed a small solution for displaying PDB Entries in a comfort > way with the applet that is great (With Ball and Stick what you > recommended me and a very useful cartoon visualisation). I must say > that the v10 beta works really great... I am glad that it was useful. > Apart from that

Re: [Jmol-users] PDB and SCOP

2004-09-30 Thread Raphael A. Bauer
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 timothy driscoll wrote: | is this a public page? I'm always interested to see how people use | Jmol... I'll post our project's url when it's available publicly for testing... (roughly mid next week). Thanks for your interest, regards, Raphael - -- // p

Re: [Jmol-users] PDB and SCOP

2004-09-30 Thread Ujjwal Das
Hi All, Thanks a lot for the replies. Please have a look at http://www.ebi.ac.uk/interpro/3DViewer/view3D?domain=1pcn00&type=cath We use Astex viewer to show SCOP/CATH structural domain on PDB chain/chains. It is a public page. We want to introduce similar viewer specially with cartoon option for

Re: [Jmol-users] PDB and SCOP

2004-09-30 Thread timothy driscoll
On 2004-09-30 (10:51) Raphael A. Bauer wrote: >-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 > >Hi Jmol List, > >I developed a small solution for displaying PDB Entries in a comfort >way with the applet that is great (With Ball and Stick what you >recommended me and a very useful cartoon visualisa

[Jmol-users] PDB and SCOP

2004-09-30 Thread Raphael A. Bauer
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi Jmol List, I developed a small solution for displaying PDB Entries in a comfort way with the applet that is great (With Ball and Stick what you recommended me and a very useful cartoon visualisation). I must say that the v10 beta works really great..