Re: [Jmol-users] Query about change from Jmol to JSmol

2015-06-01 Thread Madhurima Das
Hi Angel, Thank you so much for your help.. As suggested by you, I changed *B to *:B and *A to *:A and it worked like a charm.. Thanks once again!! Best, Madhurima On Jun 1, 2015, at 3:33 AM, Angel Herráez wrote: > Hello, Das > > Your code is complex, so it's hard to say. > There are a cou

Re: [Jmol-users] Query about change from Jmol to JSmol

2015-06-01 Thread Angel Herráez
Additonal comment: Make sure of any changes you have made in your page. Any commands and scripts that work in Jmol/Java should work in JSmol/HTML5 without changes -- ___ Jmol

Re: [Jmol-users] Query about change from Jmol to JSmol

2015-06-01 Thread Angel Herráez
Hello, Das Your code is complex, so it's hard to say. There are a couple of things that I can suggest: 1. It seems that the chain is hidden by changing spacefill and wireframe, but you need to act on cartoons too 2. Within your function ScriptLarger(f1,f2) you have select *B which sounds

Re: [Jmol-users] Query about change from Jmol to JSmol

2015-05-29 Thread Madhurima Das
Hi, This is in continuation to my previous query of converting Jmol to JSmol. Though the browser works fine with the new JSmol, the radio buttons don’t work properly. I have the same cgi script for visualizing the protein structure: (JAVA applets- Jmol version): http://dockground.compbio.ku.ed

Re: [Jmol-users] Query about change from Jmol to JSmol

2015-05-28 Thread Madhurima Das
Hi Bob, Thank you so much for the help. The browser is working fine now!! Thanks, Das On May 27, 2015, at 6:08 PM, Robert Hanson wrote: > Your Jmol2.js is faulty. It needs to read: > > Jmol.Info = { > // uncomment one or more of these next lines only if you want to > overri

Re: [Jmol-users] Query about change from Jmol to JSmol

2015-05-27 Thread Robert Hanson
Your Jmol2.js is faulty. It needs to read: Jmol.Info = { // uncomment one or more of these next lines only if you want to override jmolInitialize() //jarPath: "java", //jarFile: "JmolAppletSigned0.jar", //j2sPath: "j2s", use: "HTML5", //

[Jmol-users] Query about change from Jmol to JSmol

2015-05-27 Thread Madhurima Das
Hi, I have a cgi-perl script that runs a web-browser ("http://dockground.compbio.ku.edu/cgi-bin/visual.cgi?pdbid=gwd45052cx”) and uses Jmol applets to visualize protein structures. I need to change Jmol applets to JSmol to avoid browser JAVA security issues. I have tried several options as me