Re: [Jmol-users] jmol and overlay data

2007-06-13 Thread Raphael A. Bauer
Angel Herraez wrote: Tell me what you think of this: http://biomodel.uah.es/angel/RaphaelBauer/mapping.htm 1. wow.. thanks for that quick answer in html form! 2. wow.. simply yet elegant solution to my problem! 3. arg.. i should have thought about that earlier myself..! combining points 1.-3.

Re: [Jmol-users] jmol and overlay data

2007-06-13 Thread Bob Hanson
Raphael, this is an intriguing question. Keep talking about what sort of mapping you might imagine. What characteristics are important to you? - the mapping is visible for all atoms at once? or - the mapping is visible for an atom if the mouse is picked? for instance. Let me demonstrate with

Re: [Jmol-users] jmol and overlay data

2007-06-12 Thread Raphael A. Bauer
Angel Herraez wrote: Can you think of anything inside jmol that helps me to visualize this abstract superposition mapping? On a first thought, there may be many wasy to indicate that: csame color, lines between matching atoms, etc. The key point is how and where is your assignment

Re: [Jmol-users] jmol and overlay data

2007-06-12 Thread Angel Herraez
Hi Raphael Tell me what you think of this: http://biomodel.uah.es/angel/RaphaelBauer/mapping.htm - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of

[Jmol-users] jmol and overlay data

2007-06-11 Thread Raphael A. Bauer
Hi jmol users, I got the following visualization problem: 2 mol files: file A and file B. Plus i have an assignment (superposition) of atoms in file A that correspond to atoms in file B. Can you think of anything inside jmol that helps me to visualize this abstract superposition mapping? Many