Jmol.___JmolVersion="14.3.15_2015.06.18"
bug fix: msCIF reader can hang if occupancy is not fractional
I will get a version out later today
On Wed, Jun 17, 2015 at 5:28 AM, wrote:
>
> Thanks Bob - the hanging issue is certainly fixed.
>
> I'm still seeing render errorjava.lang.NullPointerExc
Thanks Bob - the hanging issue is certainly fixed.
I'm still seeing render errorjava.lang.NullPointerException for
two out of my collection of 60+ msCIFs
The other one is
http://scripts.iucr.org/cgi-bin/sendcif?ck5035
NB. it renders OK if I load with FILTER "MODAVERAGE"
so I can at least work r
I don't know for sure what your problem is with dk5003, Simon. That is
working for me in this latest release at chemapps. But I did find the
mistake in Jmol that causes xk5017 to stop. It's in an infinite loop.
http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.15_2015.06.16.zip
Jmol.___JmolVersion="
I think somehow the version did not get built correctly. The second loads
fine into JSmol on my machine. Yes, still something odd with the JavaScript
for xk5017. I will look at it soon.
On Mon, Jun 15, 2015 at 4:19 AM, wrote:
>
> I'm afraid I'm still seeing the same problems with:
>
> http://sc
I'm afraid I'm still seeing the same problems with:
http://scripts.iucr.org/cgi-bin/sendcif?xk5017 (hanging in JSmol but
not in Java application)
http://scripts.iucr.org/cgi-bin/sendcif?dk5003 (model not rendering)
MB in the second example, if I remove the other models leaving just the
supers
I checked with Vaclav, and he agrees that the file is invalid.
Problem #2 is with
loop_
_jana_atom_site_displace_Legendre_atom_site_label
_jana_atom_site_displace_Legendre_axis
_jana_atom_site_displace_Legendre_param_order
_jana_atom_site_displace_Legendre_param_coeff
that was a bug
#3 cra
Hmmm, that's worrying - these CIFs were apparently written by JANA
and have been published. I will look into this...
Any luck with the other problems with the JSmol applet hanging
while Jmol Java loads the CIFs OK?
Cheers
Simon
Quoting Robert Hanson :
> well, Here's what Jana2006 says. It's i
well, Here's what Jana2006 says. It's invalid.
Do you have that so you can do your own testing?
That said, I'm not adverse to having Jmol read these. But I really think
you need to divide the wave vectors by 1/2.
I'll ask Vaclav about this.
Bob
[image: Inline image 1]
On Fri, Jun 12, 201
will look at this as soon as possible. I'm sure it's something simple.
On Fri, Jun 12, 2015 at 10:27 AM, wrote:
> Just been testing Jmol 14.2.14 with my collection of msCIFs.
> I am seeing a number of file reading problems (JSmol and Java application)
> and a number of instances where the JSmol
Just been testing Jmol 14.2.14 with my collection of msCIFs.
I am seeing a number of file reading problems (JSmol and Java application)
and a number of instances where the JSmol applet simply hangs.
Example of file read problem:
script ERROR: Error reading file at line 818:
data_ce-cbn
Missing ce
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