Re: [Jmol-users] new DSSR

2016-01-29 Thread Xiang-Jun Lu
Hi, In addition to what Bob and Rolf have said, you may find the following information relevant regarding the 'new DSSR' and the 'strange' residue identifier. 1. Rolf is correct to 'suspect the "1" being the model number'. The full documentation about the so-called "Unit Id Format" (UnitId) is at

Re: [Jmol-users] new DSSR

2016-01-28 Thread Robert Hanson
On Thu, Jan 28, 2016 at 1:08 PM, Pshemak Maslak wrote: > > The new DSSR has base pairs and nucleotide indexed by numbers, For > example (the 9th base-pair): > > auxiliaryinfo.models[1].dssr.pairs[9].bp"A-T" > x=_M.dssr.pairs.getProperty("SELECT nt* where bp='T-A' or bp='A-T'") select withi

[Jmol-users] new DSSR

2016-01-28 Thread Pshemak Maslak
The new DSSR has base pairs and nucleotide indexed by numbers, For example (the 9th base-pair): auxiliaryinfo.models[1].dssr.pairs[9].bp"A-T" auxiliaryinfo.models[1].dssr.pairs[9].nt1"|1|D|A|10" auxiliaryinfo.models[1].dssr.pairs[9].nt2"|1|E|T|29" What is the proper syntax