Re: [Jmol-users] orbital isosurface default cutoff values

2010-10-07 Thread Robert Hanson
Pshemak, Here's the radial calculation: private float psi_Znuc = 1; // hydrogen private double radialPart(double r) { double rho = 2 * psi_Znuc * r / psi_n / A0; double sum = 0; for (int p = 0; p <= psi_n - psi_l - 1; p++) sum += Math.pow(-rho, p) * rfactor[p]; return M

Re: [Jmol-users] orbital isosurface default cutoff values

2010-10-06 Thread Pshemak Maslak
On 10/6/2010 11:20 AM, Robert Hanson wrote: just looked good. It's a cutoff for the psi function. I believe that's unitless. What I meant is that I assumed that values of r (in bohr) and Z (in electron-charge units) are used to calculate psi. Is that correct? Thanks, PM (for example 1s =

Re: [Jmol-users] orbital isosurface default cutoff values

2010-10-06 Thread Robert Hanson
just looked good. It's a cutoff for the psi function. I believe that's unitless. On Wed, Oct 6, 2010 at 8:57 AM, Pshemak Maslak wrote: > On 10/6/2010 9:24 AM, Robert Hanson wrote: > > The Java console reports the cutoff. I think it's 0.05. > > > I found: > > MOs 0.05 > atomic orbi

Re: [Jmol-users] orbital isosurface default cutoff values

2010-10-06 Thread Pshemak Maslak
On 10/6/2010 9:24 AM, Robert Hanson wrote: The Java console reports the cutoff. I think it's 0.05. I found: MOs 0.05 atomic orbitals 0.14 Is there a "graphical" rationale for selecting certain values? Are these wavefunction values in atomic units? Thanks, PM On Wed, O

Re: [Jmol-users] orbital isosurface default cutoff values

2010-10-06 Thread Robert Hanson
The Java console reports the cutoff. I think it's 0.05. On Wed, Oct 6, 2010 at 8:12 AM, Pshemak Maslak wrote: > I have a general question: > > What are the default cutoff values for atomic and molecular orbitals > isosurfaces generated by Jmol. Are they listed somewhere? > > Thanks, > > PM >

[Jmol-users] orbital isosurface default cutoff values

2010-10-06 Thread Pshemak Maslak
I have a general question: What are the default cutoff values for atomic and molecular orbitals isosurfaces generated by Jmol. Are they listed somewhere? Thanks, PM -- Beautiful is writing same markup. Internet Explo