Ok, Raphael, it's solved.
Your protein pdb file is somewhat singular: there are nonstandard
amino acid residues (RET, MSE), ions (HG, ZN, NI, NA), water (HOH)
and sugars (MAN, NAG). But all are marked as ATOM records and have a
residue number, so Jmol sees no HETERO groups, hence no LIGANDS
ei
Raphael A. Bauer wrote:
> background white; select all; wireframe off; backbone off; spacefill
> off; trace on;
>
> on a protein with ligands bound to it. unfortunately i am getting the
> normal trace plus a trace that seems to connect all ligands (looks like
> a giant signature of a MD).
That's
hi jmol list,
if i am issuing the script:
background white; select all; wireframe off; backbone off; spacefill
off; trace on;
on a protein with ligands bound to it. unfortunately i am getting the
normal trace plus a trace that seems to connect all ligands (looks like
a giant signature of a MD).
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