Re: [Jmol-users] implementing simultaneous molecules

2005-06-24 Thread Bob Hanson
s for the first molecule, then (10,20,30) should be deducted from the coordinates of both molecules. Anders. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Behalf Of Miguel Sent: Thursday, June 23, 2005 11:10 PM To: jmol-users@lists.sourceforge.net Subject:

Re: [Jmol-users] implementing simultaneous molecules

2005-06-24 Thread Jan Reichert
Miguel wrote: Q: What scaling factor would you expect to be applied? the same 1A = 1A I agree with Jan. Certainly 1A is always 1A. The question is ... how many pixels per angstrom? This depends on the first molecule loaded. Q: If I load a large molecule followed b

RE: [Jmol-users] implementing simultaneous molecules

2005-06-23 Thread Anders Poulsen
coordinates of both molecules. Anders. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Behalf Of Miguel Sent: Thursday, June 23, 2005 11:10 PM To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] implementing simultaneous molecules >>> Q: What scali

Re: [Jmol-users] implementing simultaneous molecules

2005-06-23 Thread timothy driscoll
On 2005-06-23 (11:09) Miguel wrote: >If we need independent rotation and translation then we can probably >terminate the discussion ... it is a *lot* of work and will not >happen in 2005. > ok, terminating discussion ;-). it is the independent rotation and translation that really adds the func

Re: [Jmol-users] implementing simultaneous molecules

2005-06-23 Thread Miguel
>>> Q: What scaling factor would you expect to be applied? >>> >>the same 1A = 1A >> > I agree with Jan. Certainly 1A is always 1A. The question is ... how many pixels per angstrom? Q: If I load a large molecule followed by a small one, does the small one just 'fit in' without changing the scali

Re: [Jmol-users] implementing simultaneous molecules

2005-06-23 Thread Bob Hanson
Regarding centering ... The first model gets centered on the screen. Q: I assume that you do not want the second model centered on the screen ... please confirm. If not, and if it is necessary to manipulate each model independently, then it is a *lot* of work. That would almost certa

Re: [Jmol-users] implementing simultaneous molecules

2005-06-23 Thread timothy driscoll
On 2005-06-23 (07:59) Jan Reichert wrote: >Miguel wrote: >>> Is it possible to load a pdb file with a protein and a mol file >>> simultaneous. If so how do you do that? >> >> Per Egon's message, this is not currently possible. >> >> If you try to load several models several questions get raised: >