[julia-users] Unexpected heavy memory allocation

2014-10-30 Thread Douglas Bates
I haven't finished with the notebook http://nbviewer.ipython.org/github/dmbates/JuliaWorkshop/blob/master/ParallelGLM.ipynb but, unfortunately, must turn my attention to something else. I'll get back to it tomorrow. In the meantime, if someone has a hint as to where the memory allocation is

Re: [julia-users] Unexpected heavy memory allocation

2014-10-30 Thread Tim Holy
Did you try julia --track-allocation=user (or all, if necessary)? See the docs: http://docs.julialang.org/en/latest/stdlib/base/#Base.clear_malloc_data --Tim On Thursday, October 30, 2014 02:16:37 PM Douglas Bates wrote: > I haven't finished with the notebook > > http://nbviewer.ipython.org/git

Re: [julia-users] Unexpected heavy memory allocation

2014-10-30 Thread Sam L
I tried calling XtWXXtWZ! with a Distribution object e.g. Bernoulli() instead of a type, likewise for Link, as in XtWXXtWz!(XtWX,XtWz,Xt,β,y,wt,Bernoulli(),LogitLink()) and changing the appropriate lines to μ = linkinv(*typeof*(L),η) μη = dμdη(*typeof*(L),η) W =

Re: [julia-users] Unexpected heavy memory allocation

2014-10-31 Thread Douglas Bates
On Friday, October 31, 2014 12:06:04 AM UTC-5, Sam L wrote: > > I tried calling XtWXXtWZ! with a Distribution object e.g. Bernoulli() > instead of a type, likewise for Link, as in > XtWXXtWz!(XtWX,XtWz,Xt,β,y,wt,Bernoulli(),LogitLink()) > and changing the appropriate lines to >