Revision: 5698
http://sourceforge.net/p/jump-pilot/code/5698
Author: ma15569
Date: 2018-01-30 17:05:15 +0000 (Tue, 30 Jan 2018)
Log Message:
-----------
Reactivated SextanteAdditionalResult on the code. Fix export output raster
problem
Modified Paths:
--------------
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/core/OpenJUMPRasterLayer.java
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/extensions/SextanteExtension.java
Modified:
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/core/OpenJUMPRasterLayer.java
===================================================================
---
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/core/OpenJUMPRasterLayer.java
2018-01-29 12:20:25 UTC (rev 5697)
+++
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/core/OpenJUMPRasterLayer.java
2018-01-30 17:05:15 UTC (rev 5698)
@@ -3,10 +3,10 @@
import java.awt.geom.Rectangle2D;
import java.awt.image.BufferedImage;
import java.awt.image.ColorModel;
-import java.awt.image.DataBuffer;
import java.awt.image.Raster;
import java.awt.image.WritableRaster;
import java.io.BufferedWriter;
+import java.io.File;
import java.io.FileOutputStream;
import java.io.FileWriter;
import java.io.IOException;
@@ -16,11 +16,23 @@
import javax.media.jai.PlanarImage;
import javax.media.jai.RasterFactory;
+import javax.xml.parsers.DocumentBuilder;
+import javax.xml.parsers.DocumentBuilderFactory;
+import javax.xml.transform.OutputKeys;
+import javax.xml.transform.Transformer;
+import javax.xml.transform.TransformerFactory;
+import javax.xml.transform.dom.DOMSource;
+import javax.xml.transform.stream.StreamResult;
import org.openjump.core.rasterimage.GeoTiffConstants;
import org.openjump.core.rasterimage.RasterImageLayer;
+import org.openjump.core.rasterimage.Stats;
import org.openjump.core.rasterimage.TiffTags;
import org.openjump.core.rasterimage.WorldFileHandler;
+import org.w3c.dom.Attr;
+import org.w3c.dom.Document;
+import org.w3c.dom.Element;
+import org.w3c.dom.NodeList;
import com.sun.media.jai.codec.TIFFEncodeParam;
import com.sun.media.jai.codec.TIFFField;
@@ -35,9 +47,6 @@
import es.unex.sextante.outputs.IOutputChannel;
public class OpenJUMPRasterLayer extends AbstractRasterLayer {
-
- private static final double DEFAULT_NO_DATA_VALUE = -99999.;
-
private String m_sFilename;
private String m_sName = "";
private AnalysisExtent m_LayerExtent;
@@ -45,94 +54,74 @@
private Raster m_Raster;
RasterImageLayer m_Layer;
- public void create(final RasterImageLayer layer) throws IOException {
+ public void create(RasterImageLayer layer) throws IOException {
+ this.m_Layer = layer;
+ this.m_Raster = layer.getRasterData(null);
+ this.m_sName = layer.getName();
+ this.m_sFilename = layer.getImageFileName();
+ Envelope env = layer.getWholeImageEnvelope();
+ this.m_LayerExtent = new AnalysisExtent();
+ this.m_LayerExtent.setCellSize((env.getMaxX() - env.getMinX())
+ / this.m_Raster.getWidth());
+ this.m_LayerExtent.setXRange(env.getMinX(), env.getMaxX(), true);
+ this.m_LayerExtent.setYRange(env.getMinY(), env.getMaxY(), true);
+ this.m_dNoDataValue = layer.getNoDataValue();
- // [Giuseppe Aruta 8 Oct. 2016] add few modification to correct bug
#410
-
- /*
- * [sstein 26 Oct. 2010] - don't use code below because the raster data
- * should be loaded new from file. It happened in tests that with the
- * code below data from another raster, created last, was used instead.
- * (e.g. calculated Point-KDE first, and then Line-KDE=> then getting
- * the polygon grid from the point-KDE raster delivered the Line-KDE
- * raster as poly grid)
- *
- * m_BaseDataObject = layer; //[sstein 2 Aug 2010], changed so we work
- * now with the raster and not the image, which may be scaled for
- * display. //m_Raster = layer.getImage().getData(); m_Raster =
- * layer.getRasterData(); //-- end m_sName = layer.getName();
- * m_sFilename = layer.getImageFileName(); Envelope env =
- * layer.getEnvelope(); m_LayerExtent = new GridExtent();
- * m_LayerExtent.setXRange(env.getMinX(), env.getMaxX());
- * m_LayerExtent.setYRange(env.getMinY(), env.getMaxY());
- * m_LayerExtent.setCellSize((env.getMaxX() - env.getMinX()) /
- * (double)m_Raster.getWidth()); m_dNoDataValue =
DEFAULT_NO_DATA_VALUE;
- */
-
+ // [Giuseppe Aruta 30 Gen. 2018] deactivated as OJ calculate anyhow
+ // statistics (and writes .xml file) when loads raster
+ // m_Stats = stats(layer);
+ // ------------------------------------------
+ // [Giuseppe Aruta 30 Gen. 2018] - Uncomment [8 Oct. 2016] and reused
+ // the previous version (Sextante
+ // 0.6) as the previous method duplicates layer name ("rastername" ->
+ // "rastername (2)").
+ // this behaviour used to create confusion on some Sextante Algorithm,
+ // like Calculus>Raster Calculator
+ // ------------------------------------------
// [sstein 26 Oct. 2010] using the new method instead
// so I do not need to change the code in all the cases
// where #.create(layer) is used
+
// System.out.println("creation of raster layer");
// create(layer, true);
-
- // [Giuseppe Aruta 29 Oct. 2016]
- // Uncomment pevious modification made by sstein.
- // It seems that after modification made in those years
- // (Raster framework now always save data/load data as file)
- // the previous described bug is not evident
- // I restored the previous code (with some modifications)
- // As it solves some problems on algorithms (Raster calculator) and
- // on Sextante Command Plugin
- m_Layer = layer;
- m_Raster = layer.getRasterData(null);
- m_sName = layer.getName();
- m_sFilename = layer.getImageFileName();
- final Envelope env = layer.getWholeImageEnvelope();
- m_LayerExtent = new AnalysisExtent();
- m_LayerExtent.setCellSize((env.getMaxX() - env.getMinX())
- / m_Raster.getWidth());
- m_LayerExtent.setXRange(env.getMinX(), env.getMaxX(), true);
- m_LayerExtent.setYRange(env.getMinY(), env.getMaxY(), true);
- m_dNoDataValue = layer.getNoDataValue();
-
}
- public void create(final RasterImageLayer layer, final boolean
loadFromFile)
+ public void create(RasterImageLayer layer, boolean loadFromFile)
throws IOException {
+ if (!loadFromFile) {
+ this.m_Layer = layer;
- if (loadFromFile == false) {
- m_Layer = layer;
// [sstein 2 Aug 2010], changed so we work now with the raster and
// not the image, which may be scaled for display.
// m_Raster = layer.getImage().getData();
- m_Raster = layer.getRasterData(null);
- // -- end
- m_sName = layer.getName();
- m_sFilename = layer.getImageFileName();
- final Envelope env = layer.getWholeImageEnvelope();
- m_LayerExtent = new AnalysisExtent();
+ this.m_Raster = layer.getRasterData(null);
+
+ this.m_sName = layer.getName();
+ this.m_sFilename = layer.getImageFileName();
+ Envelope env = layer.getWholeImageEnvelope();
+ this.m_LayerExtent = new AnalysisExtent();
// [sstein 18 Mar 2013], set cell size first, and then the extent,
// otherwise maxX and maxY will be reset
- m_LayerExtent.setCellSize((env.getMaxX() - env.getMinX())
- / m_Raster.getWidth());
- m_LayerExtent.setXRange(env.getMinX(), env.getMaxX(), true);
- m_LayerExtent.setYRange(env.getMinY(), env.getMaxY(), true);
+ this.m_LayerExtent.setCellSize((env.getMaxX() - env.getMinX())
+ / this.m_Raster.getWidth());
+ this.m_LayerExtent.setXRange(env.getMinX(), env.getMaxX(), true);
+ this.m_LayerExtent.setYRange(env.getMinY(), env.getMaxY(), true);
// [Giuseppe Aruta 8 Oct. 2016] using selected rasterlayer no data
// value instead
- m_dNoDataValue = layer.getNoDataValue();
// m_dNoDataValue = DEFAULT_NO_DATA_VALUE;
+ this.m_dNoDataValue = layer.getNoDataValue();
} else {
- final RasterImageLayer rasterLayer = new RasterImageLayer(
+ RasterImageLayer rasterLayer = new RasterImageLayer(
layer.getName(), layer.getLayerManager(),
layer.getImageFileName(), null,
layer.getWholeImageEnvelope());
- m_Layer = rasterLayer;
- m_Raster = rasterLayer.getRasterData(null);
- // -- end
- m_sName = rasterLayer.getName();
- m_sFilename = rasterLayer.getImageFileName();
- final Envelope env = rasterLayer.getWholeImageEnvelope();
- m_LayerExtent = new AnalysisExtent();
+ this.m_Layer = rasterLayer;
+ this.m_Raster = rasterLayer.getRasterData(null);
+
+ this.m_sName = rasterLayer.getName();
+ this.m_sFilename = rasterLayer.getImageFileName();
+ Envelope env = rasterLayer.getWholeImageEnvelope();
+ this.m_LayerExtent = new AnalysisExtent();
// [sstein 18 Mar 2013], set cell size first, and then the extent,
// otherwise maxX and maxY will be reset
m_LayerExtent.setCellSize((env.getMaxX() - env.getMinX())
@@ -144,116 +133,96 @@
m_dNoDataValue = layer.getNoDataValue();
// m_dNoDataValue = DEFAULT_NO_DATA_VALUE;
}
-
}
- public void create(final String name, final String filename,
- final AnalysisExtent ge, final int dataType, final int numBands,
- final Object crs) {
-
- m_Raster = RasterFactory.createBandedRaster(dataType, ge.getNX(),
+ public void create(String name, String filename, AnalysisExtent ge,
+ int dataType, int numBands, Object crs) {
+ this.m_Raster = RasterFactory.createBandedRaster(dataType, ge.getNX(),
ge.getNY(), numBands, null);
- final OpenJUMPOutputFactory fact = (OpenJUMPOutputFactory) SextanteGUI
+ OpenJUMPOutputFactory fact = (OpenJUMPOutputFactory) SextanteGUI
.getOutputFactory();
- final Envelope envelope = new Envelope();
+ Envelope envelope = new Envelope();
envelope.init(ge.getXMin(), ge.getXMax(), ge.getYMin(), ge.getYMax());
- final ColorModel colorModel = PlanarImage.createColorModel(m_Raster
+ ColorModel colorModel = PlanarImage.createColorModel(this.m_Raster
.getSampleModel());
- final BufferedImage bufimg = new BufferedImage(colorModel,
- (WritableRaster) m_Raster, false, null);
- // final PlanarImage pimage = PlanarImage.wrapRenderedImage(bufimg);
- m_Layer = new RasterImageLayer(name, fact.getContext()
+ BufferedImage bufimg = new BufferedImage(colorModel,
+ (WritableRaster) this.m_Raster, false, null);
+
+ this.m_Layer = new RasterImageLayer(name, fact.getContext()
.getLayerManager(), filename, bufimg, envelope);
- m_sName = name;
- m_sFilename = filename;
- m_LayerExtent = ge;
+ this.m_sName = name;
+ this.m_sFilename = filename;
+ this.m_LayerExtent = ge;
// [Giuseppe Aruta 8 Oct. 2016] using Sextante GUI to get no data value
// instead
m_dNoDataValue =
SextanteGUI.getOutputFactory().getDefaultNoDataValue();
// m_dNoDataValue = DEFAULT_NO_DATA_VALUE;
-
}
+ @Override
public int getBandsCount() {
-
- if (m_Raster != null) {
- return m_Raster.getNumBands();
- } else {
- return 0;
+ if (this.m_Raster != null) {
+ return this.m_Raster.getNumBands();
}
-
+ return 0;
}
- public double getCellValueInLayerCoords(final int x, final int y,
- final int band) {
-
+ @Override
+ public double getCellValueInLayerCoords(int x, int y, int band) {
try {
- if (m_Raster != null) {
- return m_Raster.getSampleDouble(x, y, band);
- } else {
- return getNoDataValue();
+ if (this.m_Raster != null) {
+ return this.m_Raster.getSampleDouble(x, y, band);
}
- } catch (final Exception e) {
return getNoDataValue();
+ } catch (Exception e) {
}
-
+ return getNoDataValue();
}
+ @Override
public int getDataType() {
-
- if (m_Raster != null) {
- return m_Raster.getDataBuffer().getDataType();
- } else {
- return DataBuffer.TYPE_DOUBLE;
+ if (this.m_Raster != null) {
+ return this.m_Raster.getDataBuffer().getDataType();
}
-
+ return 5;
}
+ @Override
public double getLayerCellSize() {
-
- if (m_LayerExtent != null) {
- return m_LayerExtent.getCellSize();
- } else {
- return 0;
+ if (this.m_LayerExtent != null) {
+ return this.m_LayerExtent.getCellSize();
}
-
+ return 0.0D;
}
+ @Override
public AnalysisExtent getLayerGridExtent() {
-
- return m_LayerExtent;
-
+ return this.m_LayerExtent;
}
+ @Override
public double getNoDataValue() {
-
- return m_dNoDataValue;
-
+ return this.m_dNoDataValue;
}
- public void setCellValue(final int x, final int y, final int band,
- final double value) {
-
- if (m_Raster instanceof WritableRaster) {
- if (this.getWindowGridExtent().containsCell(x, y)) {
- ((WritableRaster) m_Raster).setSample(x, y, band, value);
- }
+ @Override
+ public void setCellValue(int x, int y, int band, double value) {
+ if (((this.m_Raster instanceof WritableRaster))
+ && (getWindowGridExtent().containsCell(x, y))) {
+ ((WritableRaster) this.m_Raster).setSample(x, y, band, value);
}
-
}
- public void setNoDataValue(final double noDataValue) {
-
- m_dNoDataValue = noDataValue;
-
+ @Override
+ public void setNoDataValue(double noDataValue) {
+ this.m_dNoDataValue = noDataValue;
}
+ @Override
public Object getCRS() {
-
return null;
-
}
/**
@@ -261,25 +230,26 @@
*
* @return the extent of the layer
*/
+ @Override
public Rectangle2D getFullExtent() {
-
- if (m_Layer != null) {
- final Envelope envelope = m_Layer.getWholeImageEnvelope();
+ if (this.m_Layer != null) {
+ Envelope envelope = this.m_Layer.getWholeImageEnvelope();
return new Rectangle2D.Double(envelope.getMinX(),
envelope.getMinY(), envelope.getWidth(),
envelope.getHeight());
- } else {
- return null;
}
-
+ return null;
}
+ @Override
public void open() {
}
+ @Override
public void close() {
}
+ @Override
public void postProcess() throws Exception {
if (m_Layer != null) {
@@ -327,7 +297,10 @@
m_sFilename, false);
worldFileHandler.writeWorldFile(envelope, image.getWidth(),
image.getHeight());
-
+ // [Giuseppe Aruta 30 Gen. 2018] deactivated as OJ calculate anyhow
+ // statistics (and writes .xml file) when loads raster
+ // String outXML = m_sFilename + ".aux.xml";
+ // writeXLM(new File(outXML));
// Switch RAM mode of the RasterImage
m_Layer.setImageFileName(m_sFilename);
m_Layer.setNeedToKeepImage(false);
@@ -336,148 +309,84 @@
}
- public boolean export(final String sFilename) {
-
+ public boolean export(String sFilename) {
if (sFilename.endsWith("asc")) {
return exportToArcInfoASCIIFile(sFilename);
- } else if (sFilename.endsWith("tif")) {
+ }
+ if (sFilename.endsWith("tif")) {
return exportToGeoTIFFFile(sFilename);
- } else {
- return exportToGeoTIFFFile(sFilename);
}
-
+ return exportToGeoTIFFFile(sFilename);
}
- /*
- * public void postProces() throws Exception {
- *
- * if (m_Layer != null) {
- *
- * final FileOutputStream tifOut = new FileOutputStream(m_sFilename); final
- * TIFFEncodeParam param = new TIFFEncodeParam();
- * param.setCompression(TIFFEncodeParam.COMPRESSION_NONE); TIFFField[]
- * tiffFields = new TIFFField[2];
- *
- * // Cell size
- *
- *
- *
- * // No data String noDataS = Double.toString(getNoDataValue()); byte[]
- * bytes = noDataS.getBytes(); tiffFields[0] = new
- * TIFFField(TiffTags.TIFFTAG_GDAL_NODATA, TIFFField.TIFF_BYTE,
- * noDataS.length(), bytes);
- *
- * // Tie point final Envelope envelope = m_Layer.getWholeImageEnvelope();
- * tiffFields[1] = new TIFFField(GeoTiffConstants.ModelTiepointTag,
- * TIFFField.TIFF_DOUBLE, 6, new double[] { 0, 0, 0, envelope.getMinX(),
- * envelope.getMaxY(), 0 }); param.setExtraFields(tiffFields); final
- * TIFFImageEncoder encoder = (TIFFImageEncoder) TIFFCodec
- * .createImageEncoder("tiff", tifOut, param); // -- [sstein 2 Aug 2010] //
- * BufferedImage image = layer.getImage().getAsBufferedImage(); final
- * ColorModel colorModel = PlanarImage.createColorModel(m_Raster
- * .getSampleModel()); final BufferedImage image = new
- * BufferedImage(colorModel, (WritableRaster) m_Raster, false, null); // --
- * end encoder.encode(image); tifOut.close();
- *
- *
- *
- * final WorldFileHandler worldFileHandler = new WorldFileHandler(
- * m_sFilename, false); worldFileHandler.writeWorldFile(envelope,
- * image.getWidth(), image.getHeight());
- *
- * // Switch RAM mode of the RasterImage
- * m_Layer.setImageFileName(m_sFilename);
m_Layer.setNeedToKeepImage(false);
- *
- * }
- *
- * }
- */
-
- private boolean exportToGeoTIFFFile(final String sFilename) {
+ private boolean exportToGeoTIFFFile(String sFilename) {
try {
- final FileOutputStream tifOut = new FileOutputStream(m_sFilename);
- final TIFFEncodeParam param = new TIFFEncodeParam();
- param.setCompression(TIFFEncodeParam.COMPRESSION_NONE);
+ FileOutputStream tifOut = new FileOutputStream(this.m_sFilename);
+ TIFFEncodeParam param = new TIFFEncodeParam();
+ param.setCompression(1);
TIFFField[] tiffFields = new TIFFField[3];
- // [Giuseppe Aruta 8 Oct. 2016] the following parameters come from
- // RasterImageIO class
- // and add cell size, nodata value and Tie point to the new created
- // file.
+ tiffFields[0] = new TIFFField(33550, 12, 2, new double[] {
+ getLayerCellSize(), getLayerCellSize() });
- // Cell size
- tiffFields[0] = new TIFFField(GeoTiffConstants.ModelPixelScaleTag,
- TIFFField.TIFF_DOUBLE, 2, new double[] {
- getLayerCellSize(), getLayerCellSize() });
- // No data
String noDataS = Double.toString(getNoDataValue());
byte[] bytes = noDataS.getBytes();
- tiffFields[1] = new TIFFField(TiffTags.TIFFTAG_GDAL_NODATA,
- TIFFField.TIFF_BYTE, noDataS.length(), bytes);
- // Tie point
- final Envelope envelope = m_Layer.getWholeImageEnvelope();
- tiffFields[2] = new TIFFField(GeoTiffConstants.ModelTiepointTag,
- TIFFField.TIFF_DOUBLE, 6, new double[] { 0, 0, 0,
- envelope.getMinX(), envelope.getMaxY(), 0 });
+ tiffFields[1] = new TIFFField(42113, 1, noDataS.length(), bytes);
+
+ Envelope envelope = this.m_Layer.getWholeImageEnvelope();
+ tiffFields[2] = new TIFFField(33922, 12, 6, new double[] { 0.0D,
+ 0.0D, 0.0D, envelope.getMinX(), envelope.getMaxY(), 0.0D
});
param.setExtraFields(tiffFields);
- final TIFFImageEncoder encoder = (TIFFImageEncoder) TIFFCodec
+ TIFFImageEncoder encoder = (TIFFImageEncoder) TIFFCodec
.createImageEncoder("tiff", tifOut, param);
- // -- [sstein 2 Aug 2010]
- // BufferedImage image = layer.getImage().getAsBufferedImage();
- final ColorModel colorModel = PlanarImage.createColorModel(m_Raster
+
+ ColorModel colorModel = PlanarImage.createColorModel(this.m_Raster
.getSampleModel());
- final BufferedImage image = new BufferedImage(colorModel,
- (WritableRaster) m_Raster, false, null);
- // -- end
+ BufferedImage image = new BufferedImage(colorModel,
+ (WritableRaster) this.m_Raster, false, null);
+
encoder.encode(image);
tifOut.close();
- /* save geodata: */
- // final Envelope envelope = m_Layer.getWholeImageEnvelope();
-
- final WorldFileHandler worldFileHandler = new WorldFileHandler(
- m_sFilename, false);
+ WorldFileHandler worldFileHandler = new WorldFileHandler(
+ this.m_sFilename, false);
worldFileHandler.writeWorldFile(envelope, image.getWidth(),
image.getHeight());
- // Switch RAM mode of the RasterImage
- m_Layer.setImageFileName(m_sFilename);
- m_Layer.setNeedToKeepImage(false);
-
- } catch (final Exception e) {
+ this.m_Layer.setImageFileName(this.m_sFilename);
+ this.m_Layer.setNeedToKeepImage(false);
+ } catch (Exception e) {
return false;
}
-
return true;
}
- private boolean exportToArcInfoASCIIFile(final String sFilename) {
-
+ private boolean exportToArcInfoASCIIFile(String sFilename) {
try {
- final FileWriter f = new FileWriter(sFilename);
- final BufferedWriter fout = new BufferedWriter(f);
- final DecimalFormat df = new DecimalFormat("##.###");
+ FileWriter f = new FileWriter(sFilename);
+ BufferedWriter fout = new BufferedWriter(f);
+ DecimalFormat df = new DecimalFormat("##.###");
df.setDecimalFormatSymbols(new DecimalFormatSymbols(Locale.US));
df.setDecimalSeparatorAlwaysShown(true);
- fout.write("ncols " + Integer.toString(m_LayerExtent.getNX()));
+ fout.write("ncols " +
Integer.toString(this.m_LayerExtent.getNX()));
fout.newLine();
- fout.write("nrows " + Integer.toString(m_LayerExtent.getNY()));
+ fout.write("nrows " +
Integer.toString(this.m_LayerExtent.getNY()));
fout.newLine();
- fout.write("xllcorner " +
Double.toString(m_LayerExtent.getXMin()));
+ fout.write("xllcorner "
+ + Double.toString(this.m_LayerExtent.getXMin()));
fout.newLine();
- fout.write("yllcorner " +
Double.toString(m_LayerExtent.getYMin()));
+ fout.write("yllcorner "
+ + Double.toString(this.m_LayerExtent.getYMin()));
fout.newLine();
- // ArcInfo ASCII does not support individual x/y cell sizes. But
who
- // cares?
+
fout.write("cellsize "
- + Double.toString(m_LayerExtent.getCellSize()));
+ + Double.toString(this.m_LayerExtent.getCellSize()));
fout.newLine();
fout.write("nodata_value " + Double.toString(getNoDataValue()));
fout.newLine();
-
- for (int i = 0; i < m_LayerExtent.getNY(); i++) {
- for (int j = 0; j < m_LayerExtent.getNX(); j++) {
+ for (int i = 0; i < this.m_LayerExtent.getNY(); i++) {
+ for (int j = 0; j < this.m_LayerExtent.getNX(); j++) {
fout.write(df.format(getCellValueAsDouble(j, i)) + " ");
}
fout.newLine();
@@ -484,50 +393,194 @@
}
fout.close();
f.close();
- } catch (final Exception e) {
+ } catch (Exception e) {
return false;
}
-
return true;
-
}
+ @Override
public String getName() {
+ return this.m_sName;
+ }
- return m_sName;
+ @Override
+ public void setName(String sName) {
+ this.m_sName = sName;
+ if (this.m_Layer != null) {
+ this.m_Layer.setName(sName);
+ }
+ }
+ @Override
+ public void free() {
}
- public void setName(final String sName) {
+ @Override
+ public Object getBaseDataObject() {
+ return this.m_Layer;
+ }
- m_sName = sName;
+ @Override
+ public IOutputChannel getOutputChannel() {
+ return new FileOutputChannel(this.m_sFilename);
+ }
- if (m_Layer != null) {
- m_Layer.setName(sName);
- }
-
+ public String getFilename() {
+ return this.m_sFilename;
}
- public void free() {
- // TODO Auto-generated method stub
+ // [Giuseppe Aruta 30 Gen. 2018] The following code is used to a) calculate
+ // statistics of the layer
+ // b) resume srs from input raster c) write sidecar .xml file with
statistic
+ // e srs.
+ // I deactivated for now as OJ will rewrite .xml file anyhow when loads
+ // output file and srs writing need more
+ // test.
+ private Stats m_Stats;
+ public static Stats stats(RasterImageLayer layer) {
+ return layer.getMetadata().getStats();
}
- public Object getBaseDataObject() {
+ public void writeXLM(File auxXmlFile) throws Exception {
+ Stats stats = m_Stats;
+ DocumentBuilderFactory docFactory = DocumentBuilderFactory
+ .newInstance();
+ DocumentBuilder docBuilder = docFactory.newDocumentBuilder();
+ Document doc;
- return m_Layer;
+ Element pamDatasetElement;
+ NodeList pamRasterBandNodeList;
+ doc = docBuilder.newDocument();
- }
+ // Check if PAMDataset element exists and, if not, create it
+ String pamDatasetTagName = "PAMDataset";
+ pamDatasetElement = (Element) doc.getElementsByTagName(
+ pamDatasetTagName).item(0);
+ if (pamDatasetElement == null) {
+ pamDatasetElement = doc.createElement(pamDatasetTagName);
+ }
- public IOutputChannel getOutputChannel() {
+ String pamRasterBandTagName = "PAMRasterBand";
+ String pamRasterSridTagName = "SRS";
+ String bandAttribute = "band";
+ String metadataElementName = "Metadata";
- return new FileOutputChannel(m_sFilename);
+ String SRID = null;
+ // String fileSourcePath = m_Layer.getImageFileName();
+ // //// String srsCode = m_Layer.getSRSInfo().getCode();
+ // SRSInfo srsInfo = SridLookupTable.getSrsAndUnitFromCode(srsCode);
+
+ /*
+ * String extension = FileUtil.getExtension(m_sFilename).toLowerCase();
+ *
+ * if (extension.equals("tif") || extension.equals("tiff")) {
+ * TiffTags.TiffMetadata metadata = TiffTags.readMetadata(new File(
+ * fileSourcePath)); if (metadata.isGeoTiff()) {
+ *
+ * srsInfo = metadata.getSRSInfo(); } else { srsInfo =
+ * ProjUtils.getSRSInfoFromAuxiliaryFile(fileSourcePath);
+ *
+ * } } else { srsInfo =
+ * ProjUtils.getSRSInfoFromAuxiliaryFile(fileSourcePath);
+ *
+ * }
+ */
+ // m_Srid = srsCode;
+
+ // //// if (!srsCode.equals("0")) {
+ // //// SRID = SridLookupTable.getOGCWKTFromWkidCode(srsCode);
+ // //// if (!SRID.isEmpty()) {
+ // ////
+ // //// Element SRS = doc.createElement(pamRasterSridTagName);
+ // //// SRS.appendChild(doc.createTextNode(SRID));
+ // //// pamDatasetElement.appendChild(doc);
+ // //// }
+ // //// }
+
+ pamRasterBandNodeList = pamDatasetElement
+ .getElementsByTagName(pamRasterBandTagName);
+ if (pamRasterBandNodeList != null
+ && pamRasterBandNodeList.getLength() > 0) {
+ for (int b = 0; b < pamRasterBandNodeList.getLength(); b++) {
+ Element pamRasterBandElement = (Element) pamRasterBandNodeList
+ .item(b);
+ int bandNr = Integer.parseInt(pamRasterBandElement
+ .getAttribute(bandAttribute));
+
+ if (bandNr == b + 1) {
+
+ Element metadataElement = (Element) pamRasterBandElement
+ .getElementsByTagName(metadataElementName).item(0);
+ metadataElement = updateMetadataElement(doc,
+ metadataElement, m_Layer, bandNr);
+
+ pamRasterBandElement.appendChild(metadataElement);
+ pamDatasetElement.appendChild(pamRasterBandElement);
+
+ }
+ }
+ } else {
+ for (int b = 0; b < stats.getBandCount(); b++) {
+
+ Element pamRasterBandElement = doc
+ .createElement(pamRasterBandTagName);
+ Attr attr = doc.createAttribute(bandAttribute);
+ attr.setValue(Integer.toString(b + 1));
+ pamRasterBandElement.setAttributeNode(attr);
+
+ Element metadataElement = doc
+ .createElement(metadataElementName);
+ metadataElement = updateMetadataElement(doc, metadataElement,
+ m_Layer, b + 1);
+ pamRasterBandElement.appendChild(metadataElement);
+ pamDatasetElement.appendChild(pamRasterBandElement);
+ }
+
+ doc.appendChild(pamDatasetElement);
+ }
+
+ // write the content into xml file
+ TransformerFactory transformerFactory = TransformerFactory
+ .newInstance();
+ Transformer transformer = transformerFactory.newTransformer();
+ transformer.setOutputProperty(OutputKeys.INDENT, "yes");
+ transformer.setOutputProperty(
+ "{http://xml.apache.org/xslt}indent-amount";, "2");
+ DOMSource source = new DOMSource(doc);
+ StreamResult result = new StreamResult(auxXmlFile);
+ transformer.transform(source, result);
+
}
- // [sstein 26. Oct. 2012] added method back-in
- public String getFilename() {
- return m_sFilename;
+ private Element updateMetadataElement(Document doc,
+ Element metadataElement, RasterImageLayer layer, int band) {
+ Stats stats = m_Stats;
+ ;
+ Element mdi = doc.createElement("MDI");
+ mdi.setAttribute("key", "STATISTICS_MINIMUM");
+ mdi.setTextContent(Double.toString(stats.getMin(band)));
+ metadataElement.appendChild(mdi);
+
+ mdi = doc.createElement("MDI");
+ mdi.setAttribute("key", "STATISTICS_MAXIMUM");
+ mdi.setTextContent(Double.toString(stats.getMax(band)));
+ metadataElement.appendChild(mdi);
+
+ mdi = doc.createElement("MDI");
+ mdi.setAttribute("key", "STATISTICS_MEAN");
+ mdi.setTextContent(Double.toString(stats.getMean(band)));
+ metadataElement.appendChild(mdi);
+
+ mdi = doc.createElement("MDI");
+ mdi.setAttribute("key", "STATISTICS_STDDEV");
+ mdi.setTextContent(Double.toString(stats.getStdDev(band)));
+ metadataElement.appendChild(mdi);
+
+ return metadataElement;
+
}
}
Modified:
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/extensions/SextanteExtension.java
===================================================================
---
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/extensions/SextanteExtension.java
2018-01-29 12:20:25 UTC (rev 5697)
+++
plug-ins/SextantePlugIn/src/es/unex/sextante/openjump/extensions/SextanteExtension.java
2018-01-30 17:05:15 UTC (rev 5698)
@@ -1,122 +1,69 @@
package es.unex.sextante.openjump.extensions;
-import java.io.File;
-import java.net.JarURLConnection;
-import java.net.URL;
-
-import com.vividsolutions.jump.workbench.Logger;
+import com.vividsolutions.jump.workbench.WorkbenchContext;
import com.vividsolutions.jump.workbench.plugin.Extension;
import com.vividsolutions.jump.workbench.plugin.PlugInContext;
import com.vividsolutions.jump.workbench.ui.plugin.FeatureInstaller;
-import es.unex.sextante.core.Sextante;
-import es.unex.sextante.gui.core.SextanteGUI;
-import es.unex.sextante.openjump.core.OpenJUMPOutputFactory;
-import es.unex.sextante.openjump.gui.OpenJUMPGUIFactory;
-import es.unex.sextante.openjump.gui.OpenJUMPInputFactory;
-import es.unex.sextante.openjump.gui.OpenJUMPPostProcessTaskFactory;
-
public class SextanteExtension extends Extension {
- /*
- * Version History
- *
- * @ Sextante 1.0 2013-04-01 Sextante 1.0 Internationalized 2013-05-25 (Add
- * Language codes from Kosmo Sextante (ca,es,fi,hr,it), add French)
- *
- * @ Sextante 1.0.1 2016-08-10 Correct bug #480. Added Sextante Data Explorer
- *
- * @ Sextante 1.0.2 2016-10-31 Added Pick coordinates plugin. Better
- * integration between OpenJUMP and Sextante data model Upgraded
documentation
- * with a new help dialog style Fix bugs #410 and #427
- *
- * @ Sextante 1.0.2b 2016-10-31 Help dialog now shows all documentation
- * related to algorithm. Convert Help Dialog to Detached windows
- *
- * @ Sextante 1.0 OpenJUMP binding 2016-11-28 Help framework now works also
on
- * other plugins and algorithms. Solved bug related on Advanced option panel.
- * Added new icons to Results, Pick coordinates and Layer explorer. Changed
- * number version as Sextante embedded into GvSIGCE is 1.0.0 and it is newer
- * than OpenJUMP one (2009?)
- */
+ /*
+ * Version History
+ *
+ * @ Sextante 1.0 2013-04-01 Sextante 1.0 Internationalized 2013-05-25 (Add
+ * Language codes from Kosmo Sextante (ca,es,fi,hr,it), add French)
+ *
+ * @ Sextante 1.0.1 2016-08-10 Correct bug #480. Added Sextante Data
+ * Explorer
+ *
+ * @ Sextante 1.0.2 2016-10-31 Added Pick coordinates plugin. Better
+ * integration between OpenJUMP and Sextante data model Upgraded
+ * documentation with a new help dialog style Fix bugs #410 and #427
+ *
+ * @ Sextante 1.0.2b 2016-10-31 Help dialog now shows all documentation
+ * related to algorithm. Convert Help Dialog to Detached windows
+ *
+ * @ Sextante 1.0 OpenJUMP binding 2016-11-28 Help framework now works also
+ * on other plugins and algorithms. Solved bug related on Advanced option
+ * panel. Added new icons to Results, Pick coordinates and Layer explorer.
+ * Changed number version as Sextante embedded into GvSIGCE is 1.0.0 and it
+ * is newer than OpenJUMP one (2009?)
+ */
- private static final String NAME = "Sextante 1.0";
- private static final String VERSION = "OpenJUMP binding 2016-12-27";
+ private static final String NAME = "Sextante 1.0";
+ private static final String VERSION = "OpenJUMP binding 2016-12-06";
- public String getName() {
- return NAME;
- }
-
- public String getVersion() {
- return VERSION;
- }
-
- public void configure(PlugInContext context) throws Exception {
-
- Logger.debug(">> starting Sextante initialization");
-
- URL sextGUIJarUrl = SextanteGUI.class.getProtectionDomain().getCodeSource()
- .getLocation();
- Logger.debug("SextanteGUI claims to be in " + sextGUIJarUrl);
-
- if (sextGUIJarUrl == null) {
- Logger.error("Location of SextanteGUI is null.");
- return;
+ @Override
+ public String getName() {
+ return NAME;
}
- // strip possible "jar:<file:\path\to\sextante_gui.jar>!.." wrapping
- if (sextGUIJarUrl.getProtocol().equalsIgnoreCase("jar")){
- JarURLConnection connection =
- (JarURLConnection) sextGUIJarUrl.openConnection();
- sextGUIJarUrl = connection.getJarFileURL();
+ @Override
+ public String getVersion() {
+ return VERSION;
}
- File sextGUIJarFile = new File(sextGUIJarUrl.getPath());
- if (!sextGUIJarFile.isFile()) {
- Logger.error(sextGUIJarFile + " is not a file!");
- return;
- }
+ @Override
+ public void configure(PlugInContext context) throws Exception {
+ WorkbenchContext workbenchContext = context.getWorkbenchContext();
+ FeatureInstaller featureInstaller = new FeatureInstaller(
+ workbenchContext);
- File sextDir = sextGUIJarFile.getParentFile();
- if (!sextDir.isDirectory()) {
- Logger.error("Sextante folder " + sextDir + " is not a folder!");
- return;
- }
+ new SextanteToolboxPlugin().initialize(context);
+ new SextanteModelerPlugin().initialize(context);
+ new SextanteHistoryPlugin().initialize(context);
+ new SextanteCommandLinePlugin().initialize(context);
+ // new AdditionalResultsPlugIn().initialize(context);
+ new SextanteResultsPlugin().initialize(context);
+ new SextanteDataExplorerPlugin().initialize(context);
+ new SextantePickCoordinatesPlugIn().initialize(context);
+ featureInstaller.addMenuSeparator(new String[] { "Sextante" });
+ new SextanteSettingsPlugin().initialize(context);
- // sextante folder needs to be absolute so Help shows pictures properly
- String sextDirString = sextDir.getAbsolutePath();
- Logger.debug("found sextante folder " + sextDirString);
+ featureInstaller.addMenuSeparator(new String[] { "Sextante" });
- // String sextHelpDirString = new File(sextDir, "help").toString();
+ new SextanteHelpPlugIn().initialize(context);
- Sextante.initialize(sextDirString);
- SextanteGUI.setSextantePath(sextDirString);
- SextanteGUI.initialize(sextDirString);
+ }
- SextanteGUI.setGUIFactory(new OpenJUMPGUIFactory());
- SextanteGUI.setMainFrame(context.getWorkbenchFrame());
-
- SextanteGUI.setInputFactory(new OpenJUMPInputFactory(context
- .getWorkbenchContext()));
- SextanteGUI.setOutputFactory(new OpenJUMPOutputFactory(context
- .getWorkbenchContext()));
- SextanteGUI.setPostProcessTaskFactory(new
OpenJUMPPostProcessTaskFactory());
-
- FeatureInstaller featureInstaller = FeatureInstaller.getInstance();
- new SextanteToolboxPlugin().initialize(context);
- new SextanteModelerPlugin().initialize(context);
- new SextanteHistoryPlugin().initialize(context);
- new SextanteCommandLinePlugin().initialize(context);
- //[Giuseppe Aruta 2017-12-12] deactivated as integrated (from OJ 1.12)into
OpenJUMP
- //new SextanteResultsPlugin().initialize(context);
- new SextanteDataExplorerPlugin().initialize(context);
- new SextantePickCoordinatesPlugIn().initialize(context);
- featureInstaller.addMenuSeparator(new String[] { "Sextante" });
- new SextanteSettingsPlugin().initialize(context);
- featureInstaller.addMenuSeparator(new String[] { "Sextante" });
- new SextanteHelpPlugIn().initialize(context);
-
- Logger.debug("<< Successfully finished Sextante initialization.");
- }
-
}
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