[Libmesh-devel] Postdoc position available

2015-03-13 Thread Dmitry Karpeyev
big plus. Please forward this information to your colleagues that might be interested in this opportunity. Feel free to contact me for more details. Thanks! Dmitry. Dmitry Karpeyev Computation Institute University of Chicago and Argonne National Laboratory

Re: [Libmesh-devel] bugs report and fixing in ElemCutter

2014-12-04 Thread Dmitry Karpeyev
Xujun, You can use my fork or (probably better) create your own fork, push the branch there and issue a pull request, when you are ready. Let me know, if you need help with that. Dmitry. On Thu Dec 04 2014 at 2:14:02 PM John Peterson wrote: > On Thu, Dec 4, 2014 at 1:03 PM, Xujun Zhao wrote: >

Re: [Libmesh-devel] SparsityPattern::Build::parallel_sync Over-estimating Nonzeros

2014-11-26 Thread Dmitry Karpeyev
th a more careful algorithm we could get a much > better estimate (if not the right answer). > > Derek > > On Thu, Nov 27, 2014 at 12:19 AM, Dmitry Karpeyev > wrote: > >> >> Presumably, this overestimation happens only at the "boundary" nodes i >> that

[Libmesh-devel] SparsityPattern::Build::parallel_sync Over-estimating Nonzeros

2014-11-26 Thread Dmitry Karpeyev
Presumably, this overestimation happens only at the "boundary" nodes i that are contained in elements living on other MPI ranks? Those foreign ranks will count couplings (edges) i-j that are shared by their elements with the elements on rank p that owns i. Since only edge counts are communicated b

Re: [Libmesh-devel] SparsityPattern::Build::parallel_sync Over-estimating Nonzeros

2014-11-26 Thread Dmitry Karpeyev
Presumably, this overestimation happens only at the "boundary" nodes i that are contained in elements living on other MPI ranks? Those foreign ranks will count couplings (edges) i-j that are shared by their elements with the elements on rank p that owns i. Since only edge counts are communicated b

Re: [Libmesh-devel] LibMesh and XFEM

2014-11-21 Thread Dmitry Karpeyev
Ben, Xujun and I work on particles in fluid -- point particles for now, generalizing to colloidal suspensions (of extended particles later). In particular Xujun has a few ideas for using enriched bases he wanted to try. These may be related to the basis enrichment ideas we had discussed a few mon

Re: [Libmesh-devel] Parallel point location in libMesh.

2014-06-04 Thread Dmitry Karpeyev
f source points in a target mesh), what would be the common pitfalls/gotchas? Thanks for the feedback! Dmitry. > > Derek > > > > On Wed, Jun 4, 2014 at 2:24 PM, Dmitry Karpeyev > wrote: > >> John, >> >> Thanks for the pointer. >> That's what we

Re: [Libmesh-devel] Recent whitespace changes

2014-02-24 Thread Dmitry Karpeyev
On Feb 24, 2014 9:26 PM, "Derek Gaston" wrote: > > John, > > Thanks for working this out - I especially appreciate the gitconfig bit (BTW - you can add that just to your libMesh repo clones by modifying the .git/config file in just that repo). > > Also, I vote for: > > >> if (condition) >> { >

Re: [Libmesh-devel] [petsc-dev] PETSC_VERSION of dev branches

2013-12-12 Thread Dmitry Karpeyev
On Thu, Dec 12, 2013 at 5:30 PM, Satish Balay wrote: > On Thu, 12 Dec 2013, Dmitry Karpeyev wrote: > > > On Thu, Dec 12, 2013 at 5:05 PM, Satish Balay wrote: > > > > > On Thu, 12 Dec 2013, Dmitry Karpeyev wrote: > > > > > > > Is there any reaso

Re: [Libmesh-devel] Anyone successfully build libmesh with Intel 14 compilers?

2013-12-02 Thread Dmitry Karpeyev
I'm attaching a small patch that fixes the relevant API differences in 'master'. DMlibMesh is in need of a more serious overhaul, but this will make it build and run. Dmitry. On Wed, Nov 13, 2013 at 6:25 PM, Jed Brown wrote: > John Peterson writes: > > Ah, I'm using 3.3-p4, so that checkPESSL

Re: [Libmesh-devel] Anyone successfully build libmesh with Intel 14 compilers?

2013-12-02 Thread Dmitry Karpeyev
Ah, okay. Ignore it, then. Dmitry. On Wed, Nov 13, 2013 at 9:20 PM, Jed Brown wrote: > Dmitry Karpeyev writes: > > > I'm attaching a small patch that fixes the relevant API differences in > > 'master'. > > Looks like you didn't pull since Jo

[Libmesh-devel] Fwd: HIRING: Postdoctoral position in computational soft matter science

2013-11-26 Thread Dmitry Karpeyev
sely with the University of Chicago scientists at the Computation Institute as well as the Institute for Molecular Engineering. If you have questions, please feel free to contact me directly. I apologize, if you are getting this message more than once. Best regards, Dmitry. -- Dmitry Karp

[Libmesh-devel] HIRING: PETSc/libMesh/MOOSE developer

2013-11-19 Thread Dmitry Karpeyev
ail me directly. My apologies, if you are get this email multiple times. Best regards, Dmitry. -- Dmitry Karpeyev Mathematics and Computer Science Argonne National Laboratory Argonne, Illinois, USA and Computation Institute University of Chicago 5735 S. Ellis Avenue Ch

[Libmesh-devel] Fwd: Anyone successfully build libmesh with Intel 14 compilers?

2013-11-13 Thread Dmitry Karpeyev
Ah, okay. Ignore it, then. Dmitry. On Wed, Nov 13, 2013 at 9:20 PM, Jed Brown wrote: > Dmitry Karpeyev writes: > > > I'm attaching a small patch that fixes the relevant API differences in > > 'master'. > > Looks like you didn't pull since Jo

[Libmesh-devel] Fwd: Anyone successfully build libmesh with Intel 14 compilers?

2013-11-13 Thread Dmitry Karpeyev
I'm attaching a small patch that fixes the relevant API differences in 'master'. DMlibMesh is in need of a more serious overhaul, but this will make it build and run. Dmitry. On Wed, Nov 13, 2013 at 6:25 PM, Jed Brown wrote: > John Peterson writes: > > Ah, I'm using 3.3-p4, so that checkPESSL

Re: [Libmesh-devel] Bug in BAIJ preallocation?

2013-07-26 Thread Dmitry Karpeyev
Cool. Thanks, Ben. Dmitry. On Fri, Jul 26, 2013 at 3:10 PM, Kirk, Benjamin (JSC-EG311) < benjamin.k...@nasa.gov> wrote: > On Jul 26, 2013, at 12:02 PM, Dmitry Karpeyev wrote: > > > This subsequently leads to extra mallocs during matrix assembly. It > seems to me that

[Libmesh-devel] Bug in BAIJ preallocation?

2013-07-26 Thread Dmitry Karpeyev
Dear All, It appears to me that preallocation of blocked PETSc matrices may be computed incorrectly in libMesh under certain circumstances. Consider the following 9-node mesh: 8--7--9 | | | 4--3--6 | | | 1--2--5 with two first order Lagrange variables on it. Assume that _dof_cou