On Sep 4, 2010, at 10:29 AM, Anna-Lena Gerner wrote: > > Hi everybody, > > I installed libMesh on my Mac OS X, and in opt mode everything is just fine. > There also seem to be no compilation problems in dbg mode. However, in dbg > mode I get the following runtime error: (./ex4-dbg -d 1 -n 20) > > ex4-dbg(73819) malloc: *** error for object 0x1032e6fa0: pointer being freed > was not allocated > *** set a breakpoint in malloc_error_break to debug > > Program received signal SIGABRT, Aborted. > 0x00007fff853623d6 in __kill () > (gdb) bt > #0 0x00007fff853623d6 in __kill () > #1 0x00007fff85402972 in abort () > #2 0x00007fff8531a615 in free () > #3 0x0000000100026e0a in __gnu_cxx::new_allocator<char>::deallocate > (this=0x7fff5fbfb5b7, __p=0x1032e6fa0 "") at ext/new_allocator.h:95 > #4 0x0000000100020a61 in std::string::_Rep::_M_destroy (this=0x1032e6fa0, > _...@0x7fff5fbfb61f) at basic_string.tcc:449 > #5 0x000000010001b0e0 in std::string::_Rep::_M_dispose (this=0x1032e6fa0, > _...@0x7fff5fbfb61f) at basic_string.h:236 > #6 0x000000010001351b in ~basic_string (this=0x7fff5fbfcad0) at > basic_string.h:503 > #7 0x00000001016199c4 in libMesh::PerfLog::get_info_header > (this=0x7fff5fbfd2f0) at src/utils/perf_log.C:171 > #8 0x000000010161b356 in libMesh::PerfLog::get_log (this=0x7fff5fbfd2f0) at > src/utils/perf_log.C:452 > #9 0x000000010161b450 in libMesh::PerfLog::print_log (this=0x7fff5fbfd2f0) > at src/utils/perf_log.C:469 > #10 0x0000000101619481 in ~PerfLog (this=0x7fff5fbfd2f0) at > src/utils/perf_log.C:61 > #11 0x000000010000568b in assemble_poisson (e...@0x7fff5fbff570, > system_na...@0x10350fc18) at ex4.C:290 > #12 0x00000001015bbb46 in libMesh::System::user_assembly (this=0x10350fb60) > at src/systems/system.C:1451 > #13 0x00000001015b30a0 in libMesh::System::assemble (this=0x10350fb60) at > src/systems/system.C:376 > #14 0x000000010151c0a8 in libMesh::ImplicitSystem::assemble > (this=0x10350fb60) at src/systems/implicit_system.C:173 > #15 0x000000010152a394 in libMesh::LinearImplicitSystem::assemble > (this=0x10350fb60) at linear_implicit_system.h:100 > #16 0x0000000101529e55 in libMesh::LinearImplicitSystem::solve > (this=0x10350fb60) at src/systems/linear_implicit_system.C:86 > #17 0x000000010000392f in main (argc=6, argv=0x7fff5fbff880) at ex4.C:246 > > I use the GCC 4.5 compilers from http://hpc.sourceforge.net/ and installed > libMesh with the following configure options: > CC=mpicc CXX=mpicxx ./configure > --enable-everything > --enable-slepc > --with-glpk-include=/opt/local/include > --with-glpk-lib=/opt/local/lib > > (PETSc configure options are: > --with-fc=0 > --with-mpi=1 > --with-mpi-dir=/usr/local > --with-x11=1 --with-umfpack=1 > --with-umfpack-include=/opt/local/include/ufsparse > --with-umfpack-lib=[/opt/local/lib/libamd.a,/opt/local/lib/libcamd.a,/opt/local/lib/libccolamd.a,/opt/local/lib/cholmod.a,/opt/local/lib/libcolamd.a,/opt/local/lib/libumfpack.a]) >
with-mpi-dir -> /usr/local - Where are your MPI wrappers coming from? Make sure that when you compile MPI or install MPI that you use everything from the hpc.sourceforge.net installation of your GCC compilers. The Mac versions of the compilers do not play well with the third party version. You may have some cross linking going on there. If you still can't see the problem, please give us more info on your MPI installation. Thanks, Cody > I would be very thankful for any hints on this one. Thank you so much for > your help! > > Best, > Anna > > ------------------------------------------------------------------------------ > This SF.net Dev2Dev email is sponsored by: > > Show off your parallel programming skills. > Enter the Intel(R) Threading Challenge 2010. > http://p.sf.net/sfu/intel-thread-sfd > _______________________________________________ > Libmesh-users mailing list > Libmesh-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/libmesh-users ------------------------------------------------------------------------------ This SF.net Dev2Dev email is sponsored by: Show off your parallel programming skills. Enter the Intel(R) Threading Challenge 2010. http://p.sf.net/sfu/intel-thread-sfd _______________________________________________ Libmesh-users mailing list Libmesh-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/libmesh-users
