Re: [Libmesh-users] compiling libmesh on Cray

2013-08-20 Thread Jim Fonseca
yes, we are doing make install. but your explanation helped to resolve that issue--thanks! Unfortunately I see I've created a problem with two different discussions on the same thread but at least that first one is solved. Still looking into the dynamic build issue...trying to narrow it down... J

Re: [Libmesh-users] compiling libmesh on Cray

2013-08-20 Thread Kirk, Benjamin (JSC-EG311)
On Aug 20, 2013, at 2:06 PM, Jim Fonseca wrote: > Related questions: is netcdf required? I am trying with it disabled now. > Also, why does the netcdf shared library end up in > (contrib/netcdf/v4/liblib/.libs/libnetcdf.so.7) when all other libraries > seems to be .libs or contrib/.libs? > > Th

Re: [Libmesh-users] compiling libmesh on Cray

2013-08-20 Thread Jim Fonseca
Hi John, No, we are doing dynamic linking. Blue Waters supports dynamic linking and in our development phase, it seems to cause us fewer headaches, so we are not concerned about advantages of static linking right now. I'm pretty sure I was able to do this same configuration with a libmesh developm

Re: [Libmesh-users] compiling libmesh on Cray

2013-08-20 Thread John Peterson
Are you wanting to build statically on the Cray? (That is, are you already configuring with --enable-static --disable-shared?) If so, this might be related to a similar problem we faced on BG/Q, and there is an -all-static flag that can be passed to the link mode of libtool that might help out.

Re: [Libmesh-users] compiling libmesh on Cray

2013-08-20 Thread Jim Fonseca
Hi Minq, Did you ever get this resolved? I am facing the same problem. Thanks, Jim On Wed, Jul 10, 2013 at 5:55 PM, Minq Q wrote: > Hi, > > I am trying to compile libmesh on Cray XE6. Using GNU compiler. > > Then I got an error: > > CC ncgentab.o > CCLD ncgen3 > /usr/bin/ld: attem

Re: [Libmesh-users] Unable to run introduction/ex1

2013-08-20 Thread Roy Stogner
On Tue, 20 Aug 2013, John Peterson wrote: > It's not clear to me why running this example serially would > segfault while running it with mpirun would not. I've seen MPI stacks which actually *required* the mpirun/mpiexec environment, to the point that "mpirun -np 1" was the only way to execute

Re: [Libmesh-users] Unable to run introduction/ex1

2013-08-20 Thread Praveen C
Hi I configured as below on mountain lion. I use macports for the external softwares. > ./configure \ >--prefix=$HOME/Applications/libmesh/install-0.9.2.1 \ >--enable-perflog \ >--disable-tecplot \ >--enable-tecio \ >--enable-nodeconstraint \ >--enable-blocked-storage \

Re: [Libmesh-users] Unable to run introduction/ex1

2013-08-20 Thread John Peterson
On Tue, Aug 20, 2013 at 7:24 AM, Roy Stogner wrote: > > On Tue, 20 Aug 2013, Praveen C wrote: > > > How to tell the run.sh script to use mpirun ? > > "make check", "make run", etc. all respect the LIBMESH_RUN environment > variable, e.g. > > LIBMESH_RUN="mpirun -np 2" make check > It's not clear

Re: [Libmesh-users] tecio not enabled

2013-08-20 Thread Kirk, Benjamin (JSC-EG311)
On Aug 20, 2013, at 8:25 AM, Roy Stogner wrote: > > On Tue, 20 Aug 2013, Praveen C wrote: > >>> Still configure is not enabling tecio. How do I fix this ? > > What does your config.log say about tecio? Indeed - posting your configure output for these types of questions is helpful. In the c

Re: [Libmesh-users] tecio not enabled

2013-08-20 Thread Roy Stogner
On Tue, 20 Aug 2013, Praveen C wrote: >> Still configure is not enabling tecio. How do I fix this ? What does your config.log say about tecio? --- Roy -- Introducing Performance Central, a new site from SourceForge and

Re: [Libmesh-users] Unable to run introduction/ex1

2013-08-20 Thread Roy Stogner
On Tue, 20 Aug 2013, Praveen C wrote: > How to tell the run.sh script to use mpirun ? "make check", "make run", etc. all respect the LIBMESH_RUN environment variable, e.g. LIBMESH_RUN="mpirun -np 2" make check --- Roy ---

[Libmesh-users] tecio not enabled

2013-08-20 Thread Praveen C
I configured as below on mountain lion. I use macports for the external softwares. > ./configure \ >--prefix=$HOME/Applications/libmesh/install-0.9.2.1 \ >--enable-perflog \ >--disable-tecplot \ >--enable-tecio \ >--enable-nodeconstraint \ >--enable-blocked-storage \ >

Re: [Libmesh-users] Unable to run introduction/ex1

2013-08-20 Thread Praveen C
Hello I was able to run the example using mpirun since I compiled an mpi version of libmesh. How to tell the run.sh script to use mpirun ? Thanks praveen On Tue, Aug 20, 2013 at 1:38 PM, Praveen C wrote: > Hello > I am a beginner with libmesh. I compiled it on mac osx 10.8.4 and have > instal

[Libmesh-users] Unable to run introduction/ex1

2013-08-20 Thread Praveen C
Hello I am a beginner with libmesh. I compiled it on mac osx 10.8.4 and have installed version 0.9.2.1 ./configure \ --prefix=$HOME/Applications/libmesh/install-0.9.2.1 \ --enable-perflog \ --disable-tecplot \ --enable-tecio \ --enable-nodeconstraint \ --enable-blocked-storage \